Variant report

Variant	rs11956353
Chromosome Location	chr5:151120766-151120767
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151120108..151124287-chr5:151137525..151139418,3	MCF-7	breast:
2	chr5:151038173..151039121-chr5:151119926..151121303,4	K562	blood:
3	chr5:151038084..151039409-chr5:151119837..151120863,3	MCF-7	breast:
4	chr5:151118929..151121871-chr5:151122174..151125024,4	K562	blood:
5	chr5:151119267..151125823-chr5:151135086..151139341,8	K562	blood:
6	chr5:151038208..151039508-chr5:151119933..151120840,9	MCF-7	breast:
7	chr5:151036685..151039208-chr5:151120344..151122587,2	K562	blood:
8	chr5:151115125..151118299-chr5:151118871..151121711,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs10058885	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs10062143	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs10074385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs10074443	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs10477000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332554	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361115	1.00[CHB][hapmap]
rs28445353	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.91[EUR][1000 genomes]
rs28917174	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.91[EUR][1000 genomes]
rs2913890	0.94[CEU][hapmap]
rs3209060	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151098000-151124800	Weak transcription	Aorta	Aorta
2	chr5:151101800-151124800	Weak transcription	Gastric	stomach
3	chr5:151108000-151122600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:151108600-151122800	Weak transcription	Thymus	Thymus
5	chr5:151110800-151122200	Weak transcription	Dnd41	blood
6	chr5:151110800-151122400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:151111400-151121200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:151112400-151125000	Weak transcription	Esophagus	oesophagus
9	chr5:151116000-151121400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:151116200-151121600	Weak transcription	Liver	Liver
11	chr5:151116600-151121200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:151116800-151122200	Weak transcription	Spleen	Spleen
13	chr5:151117200-151122200	Weak transcription	HepG2	liver
14	chr5:151117800-151122200	Weak transcription	Primary B cells from cord blood	blood
15	chr5:151117800-151122400	Enhancers	HUVEC	blood vessel
16	chr5:151118000-151121800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:151118400-151121400	Weak transcription	Primary T cells from cord blood	blood
18	chr5:151118400-151123000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:151118600-151121400	Enhancers	Fetal Muscle Trunk	muscle
20	chr5:151119000-151120800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:151119000-151120800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:151119000-151120800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:151119000-151120800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:151119000-151120800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:151119000-151120800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:151119000-151120800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:151119000-151120800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:151119000-151120800	Enhancers	Fetal Stomach	stomach
29	chr5:151119000-151120800	Enhancers	Right Atrium	heart
30	chr5:151119000-151120800	Flanking Active TSS	HSMMtube	muscle
31	chr5:151119000-151120800	Flanking Active TSS	NH-A	brain
32	chr5:151119000-151121200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:151119000-151121200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:151119000-151121400	Enhancers	Fetal Muscle Leg	muscle
35	chr5:151119000-151122000	Enhancers	Placenta	Placenta
36	chr5:151119000-151122200	Enhancers	HMEC	breast
37	chr5:151119200-151120800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr5:151119200-151120800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:151119200-151120800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr5:151119200-151120800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr5:151119200-151120800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:151119200-151120800	Enhancers	Fetal Heart	heart
43	chr5:151119200-151120800	Flanking Active TSS	A549	lung
44	chr5:151119200-151120800	Flanking Active TSS	HSMM	muscle
45	chr5:151119200-151120800	Flanking Active TSS	Osteobl	bone
46	chr5:151119400-151120800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:151119400-151120800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:151119400-151120800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:151119400-151120800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr5:151119400-151120800	Enhancers	Brain Substantia Nigra	brain

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