Variant report

Variant	rs28917193
Chromosome Location	chr5:151132139-151132140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151132034-151132143	GM12878	blood:	n/a	n/a
2	POLR2A	chr5:151131483-151132507	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151130438..151133426-chr5:151135188..151138326,3	MCF-7	breast:
2	chr5:151130259..151133266-chr5:151136603..151138704,3	MCF-7	breast:

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000253921	TF binding region
ENSG00000177556	Chromatin interaction

rs_ID	r²[population]
rs10036616	0.88[EUR][1000 genomes]
rs10058885	0.88[EUR][1000 genomes]
rs10059511	0.90[EUR][1000 genomes]
rs10062143	0.88[EUR][1000 genomes]
rs10064300	0.94[EUR][1000 genomes]
rs10074267	0.90[EUR][1000 genomes]
rs10074385	0.90[EUR][1000 genomes]
rs10074443	0.90[EUR][1000 genomes]
rs10075210	0.96[EUR][1000 genomes]
rs10477000	0.90[EUR][1000 genomes]
rs11953528	0.93[EUR][1000 genomes]
rs11954396	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11956353	0.91[EUR][1000 genomes]
rs11958614	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12332554	0.92[EUR][1000 genomes]
rs28445353	0.92[EUR][1000 genomes]
rs28917168	0.96[EUR][1000 genomes]
rs28917174	0.96[EUR][1000 genomes]
rs3209060	0.88[EUR][1000 genomes]
rs3812003	0.92[EUR][1000 genomes]
rs3812004	0.92[EUR][1000 genomes]
rs57723600	0.90[EUR][1000 genomes]
rs6876258	0.88[EUR][1000 genomes]
rs6881068	0.92[EUR][1000 genomes]
rs6898736	0.92[EUR][1000 genomes]
rs73281646	0.92[EUR][1000 genomes]
rs7356721	0.92[EUR][1000 genomes]
rs7726718	0.87[EUR][1000 genomes]
rs7731472	0.96[EUR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:151120600-151132400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:151120600-151135000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:151120800-151134600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:151120800-151135000	Weak transcription	Small Intestine	intestine
8	chr5:151120800-151135200	Weak transcription	Stomach Mucosa	stomach
9	chr5:151120800-151136800	Weak transcription	Ovary	ovary
10	chr5:151120800-151136800	Weak transcription	Hela-S3	cervix
11	chr5:151120800-151137000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:151123400-151137200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:151124400-151136200	Weak transcription	Colonic Mucosa	Colon
14	chr5:151125000-151136800	Weak transcription	Psoas Muscle	Psoas
15	chr5:151125600-151134600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:151125600-151136200	Weak transcription	Right Atrium	heart
17	chr5:151125800-151136800	Weak transcription	Right Ventricle	heart
18	chr5:151125800-151137000	Weak transcription	Fetal Brain Male	brain
19	chr5:151126000-151132400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:151126000-151132400	Weak transcription	Fetal Kidney	kidney
21	chr5:151126000-151134800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:151126000-151134800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:151126000-151134800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:151126000-151134800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:151126000-151135000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:151126000-151135800	Weak transcription	Dnd41	blood
27	chr5:151126000-151136800	Weak transcription	Esophagus	oesophagus
28	chr5:151126000-151136800	Weak transcription	Pancreas	Pancrea
29	chr5:151126200-151132400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:151126200-151132400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr5:151126200-151134800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr5:151126200-151134800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr5:151126200-151136000	Weak transcription	Gastric	stomach
34	chr5:151126200-151136400	Weak transcription	Left Ventricle	heart
35	chr5:151126200-151136400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr5:151126200-151136600	Weak transcription	Fetal Brain Female	brain
37	chr5:151126200-151136800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:151126200-151137000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr5:151126200-151137200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:151126400-151133200	Weak transcription	Lung	lung
41	chr5:151126400-151133600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:151126400-151134800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr5:151126400-151135200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:151126400-151136400	Weak transcription	Thymus	Thymus
45	chr5:151126400-151136400	Weak transcription	HMEC	breast
46	chr5:151126400-151136600	Weak transcription	Brain Germinal Matrix	brain
47	chr5:151126400-151136600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr5:151126400-151136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:151126400-151136800	Weak transcription	Fetal Heart	heart
50	chr5:151126600-151132400	Weak transcription	Primary hematopoietic stem cells	blood

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