Variant report

Variant	rs3209060
Chromosome Location	chr5:151187811-151187812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151168972..151171803-chr5:151186497..151188019,2	K562	blood:
2	chr5:151178691..151181184-chr5:151187430..151191088,3	MCF-7	breast:
3	chr5:151175632..151178566-chr5:151186330..151187999,2	K562	blood:
4	chr5:151182482..151184188-chr5:151187460..151190410,2	K562	blood:
5	chr5:151185556..151188449-chr5:151190002..151191608,2	K562	blood:
6	chr5:151187727..151190310-chr5:151192667..151196018,4	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC36A1-5	chr5:151186316-151190911	NONHSAT104639
2	lnc-SLC36A1-5	chr5:151187002-151190915	NONHSAT104640

No data

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036616	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058885	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10062143	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074385	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074443	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	0.92[EUR][1000 genomes]
rs10477000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.89[EUR][1000 genomes]
rs12332554	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445353	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.88[EUR][1000 genomes]
rs28917174	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.88[EUR][1000 genomes]
rs3812003	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151164000-151196600	Strong transcription	Hela-S3	cervix
2	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:151164400-151189400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151164400-151194800	Strong transcription	Dnd41	blood
5	chr5:151164600-151197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:151164800-151196600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:151164800-151196800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:151165200-151197200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:151165600-151191600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:151165600-151197200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:151165800-151188200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr5:151165800-151192800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:151165800-151193000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:151165800-151194800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr5:151165800-151195000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:151165800-151196200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:151165800-151196800	Strong transcription	GM12878-XiMat	blood
18	chr5:151165800-151197000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:151166000-151192800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:151166000-151194800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:151166000-151196400	Strong transcription	Fetal Thymus	thymus
22	chr5:151166000-151196600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr5:151166000-151196800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:151166000-151197000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:151166200-151192800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr5:151166200-151196800	Strong transcription	Liver	Liver
27	chr5:151166400-151192400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:151166600-151194800	Strong transcription	Fetal Intestine Large	intestine
29	chr5:151167200-151188400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr5:151167200-151191600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:151167200-151195000	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr5:151171800-151205200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr5:151178000-151195200	Weak transcription	Fetal Brain Male	brain
34	chr5:151179000-151198600	Strong transcription	A549	lung
35	chr5:151179400-151192600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr5:151179600-151196400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:151179800-151208400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:151182200-151189400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:151182200-151189400	Weak transcription	HSMMtube	muscle
40	chr5:151183000-151199600	Weak transcription	Small Intestine	intestine
41	chr5:151183200-151195400	Strong transcription	K562	blood
42	chr5:151183400-151189400	Weak transcription	Psoas Muscle	Psoas
43	chr5:151183600-151188200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
44	chr5:151183600-151192000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr5:151183600-151210600	Weak transcription	Lung	lung
46	chr5:151183800-151188400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr5:151183800-151188400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:151183800-151188400	Weak transcription	Fetal Stomach	stomach
49	chr5:151183800-151188400	Weak transcription	Thymus	Thymus
50	chr5:151183800-151189400	Weak transcription	Fetal Brain Female	brain

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