Variant report

Variant	rs28445353
Chromosome Location	chr5:151157397-151157398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151157144..151159075-chr5:151199761..151202393,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036616	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10058885	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10062143	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074385	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	0.96[EUR][1000 genomes]
rs10477000	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.85[EUR][1000 genomes]
rs12332554	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.92[EUR][1000 genomes]
rs28917174	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.92[EUR][1000 genomes]
rs3209060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812003	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151152800-151160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:151152800-151163000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:151153000-151160000	Weak transcription	Gastric	stomach
4	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
5	chr5:151153000-151167400	Weak transcription	Lung	lung
6	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:151153800-151160400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:151153800-151162000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:151153800-151165200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
11	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:151154000-151157600	Enhancers	Colon Smooth Muscle	Colon
14	chr5:151154000-151157600	Enhancers	Fetal Heart	heart
15	chr5:151154000-151158000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr5:151154400-151157400	Weak transcription	Placenta	Placenta
17	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
19	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:151154800-151157400	Enhancers	Brain Angular Gyrus	brain
21	chr5:151154800-151158600	Weak transcription	Stomach Mucosa	stomach
22	chr5:151154800-151165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr5:151155000-151157400	Genic enhancers	HSMM	muscle
24	chr5:151155000-151158200	Weak transcription	Primary B cells from cord blood	blood
25	chr5:151155200-151157400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
26	chr5:151155200-151157400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:151155200-151157400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:151155200-151157600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:151155200-151158400	Weak transcription	Fetal Intestine Large	intestine
30	chr5:151155200-151159600	Genic enhancers	Hela-S3	cervix
31	chr5:151155200-151160600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr5:151155200-151163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
34	chr5:151155400-151157600	Genic enhancers	A549	lung
35	chr5:151155400-151158400	Weak transcription	Pancreas	Pancrea
36	chr5:151155400-151158800	Weak transcription	Fetal Brain Female	brain
37	chr5:151155400-151160600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:151155600-151157800	Strong transcription	Fetal Kidney	kidney
39	chr5:151155600-151158600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:151155800-151157400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr5:151155800-151158000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr5:151155800-151158000	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr5:151155800-151158000	Strong transcription	NHDF-Ad	bronchial
44	chr5:151155800-151158200	Strong transcription	NHEK	skin
45	chr5:151155800-151158800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:151155800-151159000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr5:151155800-151159200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:151155800-151159200	Genic enhancers	HepG2	liver
49	chr5:151155800-151159400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:151155800-151163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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