Variant report

Variant	rs10075210
Chromosome Location	chr5:151138982-151138983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr5:151138678-151138992	K562	blood:	n/a	n/a
2	MXI1	chr5:151136757-151139217	SK-N-SH	brain:	n/a	chr5:151137201-151137210 chr5:151137151-151137160
3	ARID3A	chr5:151138069-151138987	HepG2	liver:	n/a	chr5:151138521-151138537
4	IRF1	chr5:151137904-151139068	K562	blood:	n/a	chr5:151138262-151138276 chr5:151138229-151138243
5	TEAD4	chr5:151138219-151138984	K562	blood:	n/a	n/a
6	POLR2A	chr5:151137490-151139032	PBDE	blood:	n/a	n/a
7	REST	chr5:151137342-151139074	H1-neurons	neurons:	n/a	chr5:151137730-151137748 chr5:151138232-151138245
8	POLR2A	chr5:151136336-151139161	GM12891	blood:	n/a	n/a
9	HCFC1	chr5:151137788-151139060	K562	blood:	n/a	n/a
10	POLR2A	chr5:151137905-151139153	K562	blood:	n/a	n/a
11	MYC	chr5:151137566-151139017	K562	blood:	n/a	chr5:151138232-151138242
12	MXI1	chr5:151136986-151139089	IMR90	lung:	n/a	chr5:151137201-151137210 chr5:151137151-151137160
13	TBL1XR1	chr5:151137981-151138983	K562	blood:	n/a	n/a
14	POLR2A	chr5:151136977-151139073	HepG2	liver:	n/a	n/a
15	MAX	chr5:151136983-151139248	NB4	blood:	n/a	chr5:151138232-151138242
16	POLR2A	chr5:151138857-151139066	GM12878	blood:	n/a	n/a
17	MYC	chr5:151137452-151139136	NB4	blood:	n/a	chr5:151138232-151138242
18	MAX	chr5:151136942-151139052	K562	blood:	n/a	chr5:151138232-151138242
19	NR2F2	chr5:151137310-151139014	K562	blood:	n/a	n/a
20	POLR2A	chr5:151137145-151139069	K562	blood:	n/a	n/a
21	MAZ	chr5:151137427-151139253	K562	blood:	n/a	chr5:151138232-151138242

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:
2	chr5:151136180..151141661-chr5:151146894..151154161,25	MCF-7	breast:

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10036616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058885	0.92[EUR][1000 genomes]
rs10059511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062143	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs10064300	0.98[EUR][1000 genomes]
rs10074267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074443	0.94[EUR][1000 genomes]
rs10079457	0.89[CEU][hapmap]
rs10477000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs11953528	0.97[EUR][1000 genomes]
rs11954396	0.83[EUR][1000 genomes]
rs11956353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs11958614	0.81[EUR][1000 genomes]
rs12332554	0.96[EUR][1000 genomes]
rs13361115	1.00[CHB][hapmap]
rs2347597	0.85[ASW][hapmap]
rs28445353	0.96[EUR][1000 genomes]
rs28917168	0.96[EUR][1000 genomes]
rs28917174	1.00[EUR][1000 genomes]
rs28917193	0.96[EUR][1000 genomes]
rs2913890	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs2915874	0.83[AFR][1000 genomes]
rs2964580	0.93[AFR][1000 genomes]
rs2964581	0.93[AFR][1000 genomes]
rs3209060	0.92[EUR][1000 genomes]
rs3812003	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs3812004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs57723600	0.94[EUR][1000 genomes]
rs6876258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs6881068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs6898736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs73281646	0.96[EUR][1000 genomes]
rs7356721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7726718	0.91[EUR][1000 genomes]
rs7731472	1.00[EUR][1000 genomes]
rs7734314	0.92[ASW][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151137200-151139000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:151137800-151139000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr5:151138400-151139000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151138400-151139000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr5:151138400-151139000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:151138400-151139000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr5:151138400-151139000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr5:151138400-151139000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:151138400-151139000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:151138400-151139000	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr5:151138400-151139000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr5:151138400-151139000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr5:151138400-151139000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr5:151138400-151139000	Flanking Active TSS	Dnd41	blood
15	chr5:151138400-151139000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr5:151138400-151139200	Flanking Active TSS	Fetal Kidney	kidney
17	chr5:151138400-151139200	Flanking Active TSS	K562	blood
18	chr5:151138400-151139400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr5:151138400-151139600	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr5:151138600-151139000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr5:151138600-151139000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr5:151138600-151139000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr5:151138600-151139000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr5:151138600-151139000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr5:151138600-151139000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr5:151138600-151139000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr5:151138600-151139000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr5:151138600-151139000	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr5:151138600-151139000	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr5:151138600-151139000	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr5:151138600-151139000	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr5:151138600-151139000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr5:151138600-151139000	Flanking Active TSS	Fetal Brain Female	brain
34	chr5:151138600-151139000	Flanking Active TSS	Fetal Lung	lung
35	chr5:151138600-151139000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr5:151138600-151139000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr5:151138600-151139000	Flanking Active TSS	HepG2	liver
38	chr5:151138600-151139200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:151138600-151139200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:151138600-151139200	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr5:151138600-151139200	Enhancers	Fetal Heart	heart
42	chr5:151138600-151139400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:151138600-151139400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:151138600-151139400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:151138600-151139400	Enhancers	Spleen	Spleen
46	chr5:151138600-151139600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:151138600-151142800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:151138800-151139000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr5:151138800-151139000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:151138800-151139000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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