Variant report

Variant	rs6898736
Chromosome Location	chr5:151165448-151165449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151164681..151166683-chr5:151167760..151170688,3	K562	blood:
2	chr5:151164080..151166374-chr5:151167044..151170851,3	K562	blood:
3	chr5:151136859..151139236-chr5:151164379..151166253,2	MCF-7	breast:
4	chr5:151164141..151166497-chr5:151174863..151177612,2	MCF-7	breast:
5	chr5:151151210..151153371-chr5:151165047..151166781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10036616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10058885	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10062143	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074443	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs10079457	0.88[CEU][hapmap]
rs10477000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.85[EUR][1000 genomes]
rs12332554	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361115	1.00[CHB][hapmap]
rs28445353	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.92[EUR][1000 genomes]
rs28917174	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.92[EUR][1000 genomes]
rs2913890	0.94[CEU][hapmap]
rs3209060	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
2	chr5:151153000-151167400	Weak transcription	Lung	lung
3	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
5	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
9	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
11	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
13	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
14	chr5:151156200-151166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
16	chr5:151156800-151166800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:151156800-151168200	Weak transcription	NHLF	lung
18	chr5:151157000-151165800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:151157200-151166200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:151157400-151167200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:151157800-151166000	Weak transcription	Thymus	Thymus
22	chr5:151158000-151165800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr5:151158000-151167200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:151158000-151168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:151158200-151165600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr5:151158200-151166000	Weak transcription	Placenta	Placenta
27	chr5:151158200-151166000	Weak transcription	NHEK	skin
28	chr5:151158200-151167200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr5:151158200-151171200	Weak transcription	Right Ventricle	heart
30	chr5:151158600-151166200	Weak transcription	Fetal Stomach	stomach
31	chr5:151158600-151167600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr5:151158800-151165600	Weak transcription	Fetal Intestine Small	intestine
33	chr5:151158800-151165800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:151158800-151166000	Weak transcription	Fetal Thymus	thymus
35	chr5:151158800-151166600	Weak transcription	Fetal Intestine Large	intestine
36	chr5:151158800-151167200	Weak transcription	Fetal Muscle Leg	muscle
37	chr5:151158800-151167400	Weak transcription	Pancreas	Pancrea
38	chr5:151159000-151165800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:151159000-151165800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr5:151159000-151166800	Weak transcription	HMEC	breast
41	chr5:151159400-151166000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:151159400-151166000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:151159800-151165800	Weak transcription	HUVEC	blood vessel
44	chr5:151160000-151166000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr5:151160400-151166000	Weak transcription	Ovary	ovary
46	chr5:151160400-151166000	Enhancers	A549	lung
47	chr5:151160400-151168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr5:151160400-151168200	Weak transcription	Gastric	stomach
49	chr5:151160400-151169400	Weak transcription	Right Atrium	heart
50	chr5:151161200-151166200	Weak transcription	H9 Cell Line	embryonic stem cell

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