Variant report

Variant	rs10059511
Chromosome Location	chr5:151175202-151175203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151164141..151166497-chr5:151174863..151177612,2	MCF-7	breast:
2	chr5:151150030..151155155-chr5:151173493..151179253,9	K562	blood:
3	chr5:151161793..151163617-chr5:151173820..151176687,2	K562	blood:

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10036616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058885	0.98[EUR][1000 genomes]
rs10062143	0.90[CEU][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs10064300	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10074267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074443	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079457	0.89[CEU][hapmap]
rs10477000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11953528	0.97[EUR][1000 genomes]
rs11954396	0.89[EUR][1000 genomes]
rs11956353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs11958614	0.87[EUR][1000 genomes]
rs12332554	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13361115	1.00[CHB][hapmap]
rs28445353	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28917168	0.90[EUR][1000 genomes]
rs28917174	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28917193	0.90[EUR][1000 genomes]
rs2913890	0.94[CEU][hapmap]
rs3209060	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3812003	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3812004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57723600	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6876258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6881068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6898736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73281646	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7356721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7726718	0.97[EUR][1000 genomes]
rs7731472	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
2	chr5:151164000-151187800	Weak transcription	Stomach Mucosa	stomach
3	chr5:151164000-151196600	Strong transcription	Hela-S3	cervix
4	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:151164400-151189400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:151164400-151194800	Strong transcription	Dnd41	blood
7	chr5:151164600-151197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:151164800-151196600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:151164800-151196800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:151165200-151179400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:151165200-151197200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:151165600-151176200	Strong transcription	Fetal Intestine Small	intestine
13	chr5:151165600-151191600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:151165600-151197200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:151165800-151177600	Strong transcription	HUVEC	blood vessel
16	chr5:151165800-151182000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr5:151165800-151184400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:151165800-151188200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr5:151165800-151192800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr5:151165800-151193000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:151165800-151194800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr5:151165800-151195000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:151165800-151196200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:151165800-151196800	Strong transcription	GM12878-XiMat	blood
25	chr5:151165800-151197000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:151166000-151178400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:151166000-151183800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:151166000-151184000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:151166000-151184000	Strong transcription	NH-A	brain
30	chr5:151166000-151184400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:151166000-151184400	Strong transcription	Placenta	Placenta
32	chr5:151166000-151185000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:151166000-151185800	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr5:151166000-151186000	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr5:151166000-151187200	Strong transcription	NHEK	skin
36	chr5:151166000-151192800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:151166000-151194800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:151166000-151196400	Strong transcription	Fetal Thymus	thymus
39	chr5:151166000-151196600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr5:151166000-151196800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:151166000-151197000	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr5:151166200-151175600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:151166200-151178800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:151166200-151180000	Strong transcription	Fetal Stomach	stomach
45	chr5:151166200-151184000	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:151166200-151184400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:151166200-151184800	Strong transcription	Adipose Nuclei	Adipose
48	chr5:151166200-151185000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr5:151166200-151185000	Strong transcription	HSMM	muscle
50	chr5:151166200-151186600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links