Variant report

Variant	rs28917174
Chromosome Location	chr5:151136368-151136369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151136325-151136527	GM12878	blood:	n/a	n/a
2	IRF1	chr5:151135874-151136616	K562	blood:	n/a	n/a
3	HDAC2	chr5:151136328-151136657	K562	blood:	n/a	n/a
4	POLR2A	chr5:151136336-151139161	GM12891	blood:	n/a	n/a
5	POLR2A	chr5:151135775-151138585	GM12878	blood:	n/a	n/a
6	POLR2A	chr5:151136317-151138570	GM12878	blood:	n/a	n/a
7	POLR2A	chr5:151135899-151136643	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151130438..151133426-chr5:151135188..151138326,3	MCF-7	breast:
2	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:
3	chr5:151064278..151066723-chr5:151136368..151138429,2	K562	blood:
4	chr5:151136180..151141661-chr5:151146894..151154161,25	MCF-7	breast:
5	chr5:151061995..151063530-chr5:151135806..151138162,2	MCF-7	breast:

No data

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000145907	Chromatin interaction
ENSG00000113140	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036616	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10058885	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10062143	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10074385	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10074443	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	1.00[EUR][1000 genomes]
rs10477000	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.83[EUR][1000 genomes]
rs11956353	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.81[EUR][1000 genomes]
rs12332554	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445353	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.96[EUR][1000 genomes]
rs28917193	0.96[EUR][1000 genomes]
rs3209060	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812003	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:151120800-151136800	Weak transcription	Ovary	ovary
5	chr5:151120800-151136800	Weak transcription	Hela-S3	cervix
6	chr5:151120800-151137000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:151123400-151137200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:151125000-151136800	Weak transcription	Psoas Muscle	Psoas
9	chr5:151125800-151136800	Weak transcription	Right Ventricle	heart
10	chr5:151125800-151137000	Weak transcription	Fetal Brain Male	brain
11	chr5:151126000-151136800	Weak transcription	Esophagus	oesophagus
12	chr5:151126000-151136800	Weak transcription	Pancreas	Pancrea
13	chr5:151126200-151136400	Weak transcription	Left Ventricle	heart
14	chr5:151126200-151136400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:151126200-151136600	Weak transcription	Fetal Brain Female	brain
16	chr5:151126200-151136800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:151126200-151137000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr5:151126200-151137200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:151126400-151136400	Weak transcription	Thymus	Thymus
20	chr5:151126400-151136400	Weak transcription	HMEC	breast
21	chr5:151126400-151136600	Weak transcription	Brain Germinal Matrix	brain
22	chr5:151126400-151136600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:151126400-151136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:151126400-151136800	Weak transcription	Fetal Heart	heart
25	chr5:151127200-151136600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:151129800-151136400	Weak transcription	Brain Anterior Caudate	brain
27	chr5:151129800-151136800	Weak transcription	Brain Angular Gyrus	brain
28	chr5:151129800-151136800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:151130000-151136400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:151130000-151136400	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:151131400-151136800	Weak transcription	NH-A	brain
32	chr5:151132800-151137000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:151132800-151137400	Weak transcription	Aorta	Aorta
34	chr5:151133000-151136600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:151133000-151136800	Weak transcription	HSMMtube	muscle
36	chr5:151133000-151137000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:151133200-151136600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:151133200-151136800	Weak transcription	HSMM	muscle
39	chr5:151133200-151137000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:151133400-151136400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr5:151133400-151136600	Weak transcription	Fetal Muscle Leg	muscle
42	chr5:151133400-151136600	Weak transcription	Fetal Stomach	stomach
43	chr5:151133400-151136800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr5:151133400-151136800	Weak transcription	Lung	lung
45	chr5:151133400-151137000	Enhancers	Fetal Intestine Large	intestine
46	chr5:151133400-151137000	Weak transcription	Osteobl	bone
47	chr5:151133600-151136400	Weak transcription	Placenta	Placenta
48	chr5:151133600-151136600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:151133800-151136400	Weak transcription	NHEK	skin
50	chr5:151133800-151136600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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