Variant report

Variant	rs3812003
Chromosome Location	chr5:151154743-151154744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151154259-151155166	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr5:151154607-151155271	HepG2	liver:	n/a	n/a
3	E2F4	chr5:151154686-151155198	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr5:151154456-151155440	GM12878	blood:	n/a	n/a
5	POLR2A	chr5:151154157-151155353	GM12878	blood:	n/a	n/a
6	POLR2A	chr5:151154534-151155822	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr5:151154330-151154799	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr5:151154120-151156141	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151153858..151156919-chr5:151169412..151173368,3	K562	blood:
2	chr5:151152974..151155334-chr5:154133414..154135219,2	K562	blood:

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10036616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10044368	0.83[ASW][hapmap]
rs10058885	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10062143	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074443	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs10079457	0.89[CEU][hapmap]
rs10477000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.85[EUR][1000 genomes]
rs12332554	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361115	1.00[CHB][hapmap]
rs28445353	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.92[EUR][1000 genomes]
rs28917174	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.92[EUR][1000 genomes]
rs2913890	0.94[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs2915888	0.81[ASW][hapmap]
rs3209060	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151149600-151155000	Active TSS	Psoas Muscle	Psoas
2	chr5:151149800-151154800	Active TSS	Right Ventricle	heart
3	chr5:151149800-151155000	Active TSS	Aorta	Aorta
4	chr5:151152000-151155400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:151152200-151154800	Active TSS	Right Atrium	heart
6	chr5:151152200-151156000	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr5:151152400-151155200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:151152600-151155000	Transcr. at gene 5' and 3'	K562	blood
9	chr5:151152600-151155400	Transcr. at gene 5' and 3'	A549	lung
10	chr5:151152800-151160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:151152800-151163000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:151153000-151154800	Enhancers	Stomach Mucosa	stomach
13	chr5:151153000-151154800	Flanking Active TSS	NH-A	brain
14	chr5:151153000-151155200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
15	chr5:151153000-151157200	Weak transcription	Left Ventricle	heart
16	chr5:151153000-151160000	Weak transcription	Gastric	stomach
17	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
18	chr5:151153000-151167400	Weak transcription	Lung	lung
19	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:151153200-151155000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:151153200-151155400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr5:151153200-151155800	Enhancers	Primary B cells from peripheral blood	blood
23	chr5:151153400-151156600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:151153600-151155000	Flanking Active TSS	NHEK	skin
25	chr5:151153600-151155200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr5:151153600-151155200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr5:151153600-151155600	Flanking Active TSS	HUVEC	blood vessel
28	chr5:151153800-151155000	Enhancers	Fetal Stomach	stomach
29	chr5:151153800-151155000	Weak transcription	Pancreas	Pancrea
30	chr5:151153800-151155200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:151153800-151155200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:151153800-151155200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr5:151153800-151155800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:151153800-151155800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr5:151153800-151155800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr5:151153800-151155800	Enhancers	Fetal Brain Male	brain
37	chr5:151153800-151156000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:151153800-151157200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr5:151153800-151160400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr5:151153800-151162000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr5:151153800-151165200	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
43	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr5:151154000-151154800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:151154000-151154800	Weak transcription	Brain Angular Gyrus	brain
47	chr5:151154000-151154800	Enhancers	Fetal Muscle Leg	muscle
48	chr5:151154000-151154800	Enhancers	Fetal Thymus	thymus
49	chr5:151154000-151155000	Enhancers	HSMM	muscle
50	chr5:151154000-151155200	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links