Variant report

Variant	rs2033212
Chromosome Location	chr5:151264488-151264489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10044368	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs10050657	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10062169	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065313	0.82[ASN][1000 genomes]
rs10078632	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10079787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1042877	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs10463320	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476776	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10476778	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1062177	0.87[CHB][hapmap]
rs11167557	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11167559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11954338	0.81[EUR][1000 genomes]
rs12108921	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12109022	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12109585	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12518238	0.82[ASN][1000 genomes]
rs12653926	0.82[ASN][1000 genomes]
rs12658422	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1366238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1428159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1428160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433041	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs1549920	0.87[CHB][hapmap]
rs17741826	0.87[CHB][hapmap]
rs2347597	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs2913878	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2913879	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913881	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913882	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2913888	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913889	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913892	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913893	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913894	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915822	0.87[CHB][hapmap]
rs2915826	0.86[CHB][hapmap]
rs2915827	0.87[CHB][hapmap]
rs2915868	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2915872	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs2915876	0.87[CHB][hapmap]
rs2915878	0.86[CHB][hapmap]
rs2915879	0.87[CHB][hapmap]
rs2915880	0.87[CHB][hapmap]
rs2915885	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2915886	0.88[CEU][hapmap];0.88[CHB][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs2915888	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs2915890	0.85[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs2964570	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2964574	0.87[CHB][hapmap]
rs2964584	0.87[CHB][hapmap]
rs2964587	0.87[CHB][hapmap]
rs2964591	0.87[CHB][hapmap]
rs2964592	0.87[CHB][hapmap]
rs2964596	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2964597	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964599	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2964601	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964603	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964606	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35692301	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4075273	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4076138	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4259159	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4331885	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4360031	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4362933	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4379180	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4419575	0.80[EUR][1000 genomes]
rs4478307	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4510568	0.80[EUR][1000 genomes]
rs4541649	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4555782	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4571461	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4594844	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4629583	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394144	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62394155	0.82[ASN][1000 genomes]
rs6579897	0.87[CHB][hapmap]
rs6579906	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6579908	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6579909	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6579910	0.80[ASN][1000 genomes]
rs6863833	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6863837	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6868371	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6870491	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6878691	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6892117	0.97[ASN][1000 genomes]
rs6896518	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6896664	0.97[ASN][1000 genomes]
rs72802219	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7341167	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702751	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7711609	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7711771	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7712779	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719617	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7725327	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7728956	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7729026	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7733241	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7734314	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs892006	0.87[CHB][hapmap]
rs9324712	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9324714	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2033212	C5orf46	cis	parietal	SCAN
rs2033212	RP11-54C4.1	cis	Nerve Tibial	GTEx
rs2033212	SYNPO	cis	parietal	SCAN
rs2033212	ATOX1	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151260800-151265200	Enhancers	Fetal Heart	heart
2	chr5:151264200-151264600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:151264400-151264600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:151264400-151265400	Enhancers	GM12878-XiMat	blood

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