The 2.0 version of rSNPBase

Variant report

Variant rs6579897
Chromosome Location chr5:151112513-151112514
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:151098000-151120200 Weak transcription Duodenum Mucosa Duodenum
2 chr5:151098000-151124800 Weak transcription Aorta Aorta
3 chr5:151098800-151117800 Weak transcription HSMM muscle
4 chr5:151100000-151116000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr5:151101800-151118400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:151101800-151124800 Weak transcription Gastric stomach
7 chr5:151102800-151113000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr5:151102800-151116600 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr5:151103000-151120000 Weak transcription Primary B cells from peripheral blood blood
10 chr5:151103600-151115400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr5:151104400-151116200 Weak transcription Adipose Nuclei Adipose
12 chr5:151104400-151116800 Weak transcription Ovary ovary
13 chr5:151106400-151119000 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr5:151106400-151119400 Weak transcription Fetal Intestine Large intestine
15 chr5:151106600-151119200 Weak transcription Rectal Smooth Muscle rectum
16 chr5:151107200-151119400 Weak transcription Brain Anterior Caudate brain
17 chr5:151107600-151120200 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr5:151108000-151122600 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr5:151108600-151122800 Weak transcription Thymus Thymus
20 chr5:151109000-151119600 Weak transcription Brain Angular Gyrus brain
21 chr5:151109400-151119600 Weak transcription Brain Cingulate Gyrus brain
22 chr5:151109600-151113000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr5:151109600-151119400 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr5:151109600-151120400 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr5:151110200-151112600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr5:151110200-151113200 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr5:151110200-151119000 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr5:151110400-151113000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr5:151110400-151115800 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr5:151110400-151118200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr5:151110400-151119800 Weak transcription Fetal Intestine Small intestine
32 chr5:151110600-151116200 Weak transcription Primary monocytes fromperipheralblood blood
33 chr5:151110600-151117200 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr5:151110800-151113000 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr5:151110800-151113200 Weak transcription Primary B cells from cord blood blood
36 chr5:151110800-151119000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr5:151110800-151119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:151110800-151122200 Weak transcription Dnd41 blood
39 chr5:151110800-151122400 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr5:151111000-151117600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr5:151111200-151116400 Weak transcription GM12878-XiMat blood
42 chr5:151111200-151119000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr5:151111400-151121200 Weak transcription Primary hematopoietic stem cells blood
44 chr5:151111800-151112600 Enhancers iPS-20b Cell Line embryonic stem cell
45 chr5:151111800-151120200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr5:151112000-151112600 Enhancers H1 Cell Line embryonic stem cell
47 chr5:151112000-151112600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
48 chr5:151112000-151112600 Enhancers Psoas Muscle Psoas
49 chr5:151112000-151112800 Enhancers Fetal Muscle Leg muscle
50 chr5:151112000-151113400 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015