Variant report

Variant	rs7719617
Chromosome Location	chr5:151167380-151167381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10044368	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1042877	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1062177	0.94[CHB][hapmap]
rs12108921	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs12109022	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs1433041	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1549920	0.94[CHB][hapmap]
rs17741826	0.94[CHB][hapmap]
rs2347597	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2913889	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap]
rs2913892	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2913893	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2913894	0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2915822	0.94[CHB][hapmap]
rs2915826	0.94[CHB][hapmap]
rs2915827	0.94[CHB][hapmap]
rs2915868	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs2915872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs2915876	0.94[CHB][hapmap]
rs2915878	0.94[CHB][hapmap]
rs2915879	0.94[CHB][hapmap]
rs2915880	0.94[CHB][hapmap]
rs2915886	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2915888	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2915890	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2964570	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2964574	0.94[CHB][hapmap]
rs2964584	0.94[CHB][hapmap]
rs2964587	0.94[CHB][hapmap]
rs2964591	0.94[CHB][hapmap]
rs2964592	0.94[CHB][hapmap]
rs4571461	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6579897	0.94[CHB][hapmap]
rs7728956	0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7733241	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs7734314	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs892006	0.94[CHB][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
2	chr5:151153000-151167400	Weak transcription	Lung	lung
3	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
8	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
10	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
12	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
13	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
14	chr5:151156800-151168200	Weak transcription	NHLF	lung
15	chr5:151158000-151168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:151158200-151171200	Weak transcription	Right Ventricle	heart
17	chr5:151158600-151167600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr5:151158800-151167400	Weak transcription	Pancreas	Pancrea
19	chr5:151160400-151168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:151160400-151168200	Weak transcription	Gastric	stomach
21	chr5:151160400-151169400	Weak transcription	Right Atrium	heart
22	chr5:151161200-151170400	Weak transcription	Brain Anterior Caudate	brain
23	chr5:151161400-151170400	Weak transcription	Brain Substantia Nigra	brain
24	chr5:151161600-151167400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:151161600-151169000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:151161600-151169000	Weak transcription	Brain Angular Gyrus	brain
27	chr5:151162200-151167600	Weak transcription	Fetal Brain Female	brain
28	chr5:151162200-151169000	Weak transcription	NHDF-Ad	bronchial
29	chr5:151163800-151167400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:151164000-151169200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:151164000-151187800	Weak transcription	Stomach Mucosa	stomach
32	chr5:151164000-151196600	Strong transcription	Hela-S3	cervix
33	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:151164400-151189400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:151164400-151194800	Strong transcription	Dnd41	blood
36	chr5:151164600-151197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:151164800-151167400	Weak transcription	Fetal Kidney	kidney
38	chr5:151164800-151171200	Weak transcription	Small Intestine	intestine
39	chr5:151164800-151196600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:151164800-151196800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:151165000-151167400	Weak transcription	Primary B cells from cord blood	blood
42	chr5:151165000-151167400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:151165000-151167400	Weak transcription	Colon Smooth Muscle	Colon
44	chr5:151165000-151167600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr5:151165000-151168200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr5:151165200-151167800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr5:151165200-151169400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr5:151165200-151170600	Weak transcription	Brain Hippocampus Middle	brain
49	chr5:151165200-151173600	Weak transcription	Fetal Heart	heart
50	chr5:151165200-151179400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links