Variant report

Variant	rs6892117
Chromosome Location	chr5:151264985-151264986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10044368	0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs10050657	0.89[ASN][1000 genomes]
rs10062169	0.95[ASN][1000 genomes]
rs10078632	0.92[ASN][1000 genomes]
rs10079787	0.92[ASN][1000 genomes]
rs1042877	0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs10463320	0.91[ASN][1000 genomes]
rs1062177	0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs11167557	0.86[ASN][1000 genomes]
rs11167559	0.93[ASN][1000 genomes]
rs12108921	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12109022	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12109585	0.92[ASN][1000 genomes]
rs12515762	0.82[EUR][1000 genomes]
rs12518238	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12518722	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12653926	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654573	0.80[EUR][1000 genomes]
rs12658422	0.82[ASN][1000 genomes]
rs1346489	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1366238	0.94[ASN][1000 genomes]
rs1428159	0.95[ASN][1000 genomes]
rs1428160	0.95[ASN][1000 genomes]
rs1433041	0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs1549622	0.92[EUR][1000 genomes]
rs1549920	0.80[CEU][hapmap];0.87[CHB][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs17741826	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap]
rs17804178	0.80[EUR][1000 genomes]
rs2033212	0.97[ASN][1000 genomes]
rs2347597	0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs2913878	0.92[ASN][1000 genomes]
rs2913879	0.97[ASN][1000 genomes]
rs2913881	0.95[ASN][1000 genomes]
rs2913882	0.91[ASN][1000 genomes]
rs2913888	0.95[ASN][1000 genomes]
rs2913889	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2913892	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2913893	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2913894	1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2915822	0.80[CEU][hapmap];0.87[CHB][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs2915826	0.87[CHB][hapmap]
rs2915827	0.87[CHB][hapmap]
rs2915868	0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs2915872	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2915876	0.89[CEU][hapmap];0.87[CHB][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs2915878	0.87[CHB][hapmap]
rs2915879	0.87[CHB][hapmap]
rs2915880	0.87[CHB][hapmap]
rs2915882	0.89[CEU][hapmap]
rs2915886	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2915888	0.94[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs2915890	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs2964570	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2964574	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[TSI][hapmap]
rs2964584	0.89[CEU][hapmap];0.87[CHB][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap]
rs2964587	0.87[CHB][hapmap]
rs2964591	0.87[CHB][hapmap];0.92[TSI][hapmap]
rs2964592	0.87[CHB][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap]
rs2964596	0.89[ASN][1000 genomes]
rs2964597	0.97[ASN][1000 genomes]
rs2964599	0.91[ASN][1000 genomes]
rs2964601	0.95[ASN][1000 genomes]
rs2964603	0.95[ASN][1000 genomes]
rs2964604	0.95[ASN][1000 genomes]
rs2964606	0.95[ASN][1000 genomes]
rs2964612	0.80[EUR][1000 genomes]
rs35692301	0.82[ASN][1000 genomes]
rs4075273	0.92[ASN][1000 genomes]
rs4076138	0.92[ASN][1000 genomes]
rs4259159	0.95[ASN][1000 genomes]
rs4331885	0.91[ASN][1000 genomes]
rs4362933	0.80[ASN][1000 genomes]
rs4379180	0.80[ASN][1000 genomes]
rs4478307	0.95[ASN][1000 genomes]
rs4555782	0.80[ASN][1000 genomes]
rs4571461	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4594844	0.80[ASN][1000 genomes]
rs59580263	0.98[EUR][1000 genomes]
rs62377945	0.82[EUR][1000 genomes]
rs62394144	0.82[ASN][1000 genomes]
rs62394146	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394155	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395861	0.98[EUR][1000 genomes]
rs6579897	0.87[CHB][hapmap]
rs6579909	0.80[ASN][1000 genomes]
rs6863833	0.86[ASN][1000 genomes]
rs6863837	0.86[ASN][1000 genomes]
rs6868371	0.92[ASN][1000 genomes]
rs6870491	0.91[ASN][1000 genomes]
rs6878691	0.92[ASN][1000 genomes]
rs6884630	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6896518	0.92[ASN][1000 genomes]
rs6896664	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72802219	0.88[ASN][1000 genomes]
rs7341167	0.86[ASN][1000 genomes]
rs7702751	0.86[ASN][1000 genomes]
rs7711609	0.92[ASN][1000 genomes]
rs7711771	0.92[ASN][1000 genomes]
rs7712779	0.94[ASN][1000 genomes]
rs7719617	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7725327	0.92[ASN][1000 genomes]
rs7728956	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7729026	0.93[ASN][1000 genomes]
rs7733241	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs7734314	0.94[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs892006	0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs919262	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs919263	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9324712	0.92[ASN][1000 genomes]
rs9324714	0.91[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6892117	CD74	cis	cerebellum	SCAN
rs6892117	RP11-54C4.1	cis	Nerve Tibial	GTEx
rs6892117	SYNPO	cis	parietal	SCAN
rs6892117	C5orf46	cis	parietal	SCAN
rs6892117	RP11-54C4.1	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151260800-151265200	Enhancers	Fetal Heart	heart
2	chr5:151264400-151265400	Enhancers	GM12878-XiMat	blood
3	chr5:151264600-151265200	Enhancers	Gastric	stomach
4	chr5:151264600-151266800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:151264800-151265000	Enhancers	H9 Cell Line	embryonic stem cell

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