The 2.0 version of rSNPBase

Variant report

Variant rs62377945
Chromosome Location chr5:151208004-151208005
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:151179800-151208400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:151183600-151210600 Weak transcription Lung lung
3 chr5:151183800-151208400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr5:151183800-151209600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:151183800-151213400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr5:151188200-151210400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr5:151190400-151210400 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr5:151192200-151208200 Weak transcription H9 Cell Line embryonic stem cell
9 chr5:151192400-151209800 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr5:151192400-151210000 Weak transcription Aorta Aorta
11 chr5:151192400-151211200 Weak transcription NHLF lung
12 chr5:151192600-151209800 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr5:151192800-151208400 Weak transcription H1 Cell Line embryonic stem cell
14 chr5:151192800-151209600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr5:151192800-151209800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr5:151193000-151210400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr5:151193200-151210600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr5:151193600-151211400 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr5:151194800-151209000 Weak transcription Brain Anterior Caudate brain
20 chr5:151194800-151209600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr5:151194800-151210400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr5:151196600-151210400 Weak transcription Primary T cells fromperipheralblood blood
23 chr5:151196800-151209400 Weak transcription Liver Liver
24 chr5:151196800-151211400 Weak transcription GM12878-XiMat blood
25 chr5:151197000-151208200 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr5:151197000-151211400 Weak transcription NH-A brain
27 chr5:151198200-151210600 Weak transcription Muscle Satellite Cultured Cells --
28 chr5:151200200-151208800 Strong transcription A549 lung
29 chr5:151200200-151211400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr5:151200600-151208200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr5:151200600-151208600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr5:151202600-151208800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr5:151203800-151210400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr5:151204400-151210000 Strong transcription HSMM muscle
35 chr5:151204800-151210000 Weak transcription HSMMtube muscle
36 chr5:151205600-151208600 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr5:151205600-151208800 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr5:151205600-151208800 Weak transcription Fetal Thymus thymus
39 chr5:151205600-151210000 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr5:151205600-151210800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr5:151205800-151209600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr5:151205800-151211200 Weak transcription Primary T cells from cord blood blood
43 chr5:151206200-151208400 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr5:151206200-151209800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr5:151206400-151210200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr5:151207200-151210000 Weak transcription HMEC breast
47 chr5:151207400-151210000 Weak transcription NHEK skin
48 chr5:151207600-151208400 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr5:151207800-151211600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr5:151207800-151212400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015