Variant report

Variant	rs2915871
Chromosome Location	chr5:151158244-151158245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151038196..151041109-chr5:151157655..151161626,4	K562	blood:
2	chr5:151157780..151160466-chr5:151195592..151198103,2	K562	blood:
3	chr5:151157663..151160002-chr5:151190625..151192955,2	K562	blood:
4	chr5:151157144..151159075-chr5:151199761..151202393,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10044368	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10065313	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10075101	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1042877	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10476776	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10476778	0.85[EUR][1000 genomes]
rs1062177	0.81[ASN][1000 genomes]
rs11167557	0.84[EUR][1000 genomes]
rs11954338	0.85[EUR][1000 genomes]
rs12654877	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12658422	0.84[EUR][1000 genomes]
rs1433041	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1549920	0.82[ASN][1000 genomes]
rs1549921	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17804178	0.81[ASN][1000 genomes]
rs1972780	0.80[ASN][1000 genomes]
rs1978710	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2016409	0.82[ASN][1000 genomes]
rs2053063	0.81[ASN][1000 genomes]
rs2347596	0.81[ASN][1000 genomes]
rs2347597	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915816	0.87[ASN][1000 genomes]
rs2915821	0.82[ASN][1000 genomes]
rs2915822	0.82[ASN][1000 genomes]
rs2915823	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915824	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915868	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915869	0.81[ASN][1000 genomes]
rs2915870	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915873	0.83[ASN][1000 genomes]
rs2915874	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915879	0.82[ASN][1000 genomes]
rs2915880	0.82[ASN][1000 genomes]
rs2915881	0.82[ASN][1000 genomes]
rs2915882	0.82[ASN][1000 genomes]
rs2915883	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915885	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915886	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915888	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2915890	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2915891	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915892	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915893	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915894	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964568	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2964569	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2964570	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964571	0.81[ASN][1000 genomes]
rs2964572	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964573	0.82[ASN][1000 genomes]
rs2964574	0.83[ASN][1000 genomes]
rs2964577	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2964578	0.82[ASN][1000 genomes]
rs2964580	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964581	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964582	0.82[ASN][1000 genomes]
rs2964584	0.82[ASN][1000 genomes]
rs2964585	0.81[ASN][1000 genomes]
rs2964610	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2964611	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2964613	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35692301	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4360031	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4362933	0.85[EUR][1000 genomes]
rs4379180	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4419575	0.86[EUR][1000 genomes]
rs4472253	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4510568	0.86[EUR][1000 genomes]
rs4541649	0.85[EUR][1000 genomes]
rs4555782	0.85[EUR][1000 genomes]
rs4571461	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4594844	0.85[EUR][1000 genomes]
rs4629583	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4629586	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62394144	0.84[EUR][1000 genomes]
rs6579906	0.85[EUR][1000 genomes]
rs6579908	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6579909	0.84[EUR][1000 genomes]
rs6579910	0.82[AMR][1000 genomes]
rs6863833	0.84[EUR][1000 genomes]
rs6863837	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6879461	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72802204	0.81[ASN][1000 genomes]
rs7341167	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7702751	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7715560	0.82[AMR][1000 genomes]
rs7715874	0.80[EUR][1000 genomes]
rs7720579	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7733241	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7734314	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7735811	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs892005	0.81[ASN][1000 genomes]
rs892006	0.81[ASN][1000 genomes]
rs973529	0.81[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151152800-151160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:151152800-151163000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:151153000-151160000	Weak transcription	Gastric	stomach
4	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
5	chr5:151153000-151167400	Weak transcription	Lung	lung
6	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:151153800-151160400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:151153800-151162000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:151153800-151165200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
11	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
15	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:151154800-151158600	Weak transcription	Stomach Mucosa	stomach
17	chr5:151154800-151165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr5:151155200-151158400	Weak transcription	Fetal Intestine Large	intestine
19	chr5:151155200-151159600	Genic enhancers	Hela-S3	cervix
20	chr5:151155200-151160600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr5:151155200-151163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
23	chr5:151155400-151158400	Weak transcription	Pancreas	Pancrea
24	chr5:151155400-151158800	Weak transcription	Fetal Brain Female	brain
25	chr5:151155400-151160600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:151155600-151158600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:151155800-151158800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:151155800-151159000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr5:151155800-151159200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:151155800-151159200	Genic enhancers	HepG2	liver
31	chr5:151155800-151159400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:151155800-151163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
35	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
36	chr5:151156000-151158800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:151156000-151159400	Weak transcription	Brain Hippocampus Middle	brain
38	chr5:151156200-151158400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:151156200-151158800	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr5:151156200-151160000	Weak transcription	Brain Anterior Caudate	brain
41	chr5:151156200-151166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
43	chr5:151156400-151158800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr5:151156400-151159000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
45	chr5:151156400-151159000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr5:151156600-151158400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr5:151156600-151158600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:151156600-151158600	Strong transcription	Fetal Thymus	thymus
49	chr5:151156600-151158800	Enhancers	Ovary	ovary
50	chr5:151156600-151159000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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