Variant report

Variant	rs1465555
Chromosome Location	chr5:151289698-151289699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151283250..151284874-chr5:151288406..151290041,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1346489	0.82[ASN][1000 genomes]
rs1428155	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1428157	0.81[CHB][hapmap]
rs1428158	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549619	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549620	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549622	0.87[ASN][1000 genomes]
rs167321	0.87[ASN][1000 genomes]
rs177349	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177350	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs182488	0.89[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs186217	0.80[CHB][hapmap]
rs188553	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188554	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2584895	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913884	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2913885	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964565	0.89[ASN][1000 genomes]
rs2964607	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964608	0.84[ASN][1000 genomes]
rs302392	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302395	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302396	0.83[JPT][hapmap]
rs302397	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302400	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs302412	0.87[ASN][1000 genomes]
rs302413	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302414	0.87[ASN][1000 genomes]
rs302415	0.86[ASN][1000 genomes]
rs400545	0.85[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279329	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428264	0.82[ASN][1000 genomes]
rs4302572	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59580263	0.86[ASN][1000 genomes]
rs62395861	0.88[ASN][1000 genomes]
rs6579913	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6884630	0.82[ASN][1000 genomes]
rs7729457	0.81[JPT][hapmap]
rs919260	0.86[ASN][1000 genomes]
rs919262	0.82[ASN][1000 genomes]
rs919263	0.81[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151286000-151290200	Weak transcription	NHEK	skin
2	chr5:151286000-151290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:151286200-151290200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:151286400-151290200	Weak transcription	HMEC	breast
5	chr5:151286600-151291600	Weak transcription	Aorta	Aorta
6	chr5:151289600-151289800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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