Variant report

Variant	rs6870434
Chromosome Location	chr5:94163956-94163957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:94163950-94164017	ProgFib	skin:	n/a	n/a

Variant related genes	Relation type
RPL7P18	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55660342	1.00[AFR][1000 genomes]
rs7711182	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964907	chr5:94161637-94166013	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94148000-94164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:94157000-94168200	Weak transcription	Thymus	Thymus
6	chr5:94160000-94168200	Weak transcription	GM12878-XiMat	blood
7	chr5:94162000-94164000	Weak transcription	Adipose Nuclei	Adipose
8	chr5:94162400-94164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:94162400-94164000	Weak transcription	Lung	lung
10	chr5:94162400-94164000	Weak transcription	Spleen	Spleen
11	chr5:94162400-94164600	Weak transcription	HUVEC	blood vessel
12	chr5:94162400-94184800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:94162600-94164200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:94162600-94169600	Weak transcription	Gastric	stomach
15	chr5:94163000-94165400	Weak transcription	Right Ventricle	heart
16	chr5:94163400-94182600	Weak transcription	Brain Anterior Caudate	brain
17	chr5:94163600-94165600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:94163800-94165000	ZNF genes & repeats	Fetal Thymus	thymus
19	chr5:94163800-94165800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94163800-94166000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr5:94163800-94166000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr5:94163800-94209800	Weak transcription	Dnd41	blood

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