Variant report

Variant	rs55660342
Chromosome Location	chr5:94345406-94345407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1426099	0.83[ASN][1000 genomes]
rs66995620	0.83[ASN][1000 genomes]
rs6870434	1.00[AFR][1000 genomes]
rs72777390	0.90[ASN][1000 genomes]
rs72777398	0.90[ASN][1000 genomes]
rs72777399	0.87[ASN][1000 genomes]
rs72777400	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72777401	0.83[ASN][1000 genomes]
rs72779403	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
2	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94334800-94353400	Weak transcription	Gastric	stomach
4	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
5	chr5:94337800-94346800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94339800-94349600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94340800-94349400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:94340800-94352200	Weak transcription	Lung	lung
9	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
10	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:94341000-94349200	Weak transcription	Fetal Thymus	thymus
12	chr5:94341000-94349400	Weak transcription	Primary T cells from cord blood	blood
13	chr5:94341400-94349200	Weak transcription	Brain Anterior Caudate	brain
14	chr5:94341600-94346600	Weak transcription	Left Ventricle	heart
15	chr5:94343200-94346800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:94343200-94349600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:94343400-94345800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr5:94344200-94363400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:94344400-94352200	Weak transcription	Primary B cells from cord blood	blood
20	chr5:94344800-94346400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr5:94344800-94346400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:94344800-94346600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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