Variant report

Variant	rs72777399
Chromosome Location	chr5:94379445-94379446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1426099	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55660342	0.87[ASN][1000 genomes]
rs55682625	0.95[EUR][1000 genomes]
rs56281733	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56386135	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66789646	0.95[EUR][1000 genomes]
rs66816988	0.95[EUR][1000 genomes]
rs66995620	0.96[ASN][1000 genomes]
rs67223139	0.95[EUR][1000 genomes]
rs67482451	0.95[EUR][1000 genomes]
rs72777358	0.92[EUR][1000 genomes]
rs72777361	0.95[EUR][1000 genomes]
rs72777365	0.95[EUR][1000 genomes]
rs72777369	0.95[EUR][1000 genomes]
rs72777390	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72777398	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72777400	0.96[ASN][1000 genomes]
rs72777401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72779403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72779406	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72779407	0.95[EUR][1000 genomes]
rs72779408	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72779410	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72779411	0.93[EUR][1000 genomes]
rs72779424	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94377800-94382000	Enhancers	HUVEC	blood vessel
3	chr5:94378200-94380000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94378200-94382000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:94378400-94380800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94378400-94381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94378400-94381400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:94378600-94380200	Enhancers	Fetal Stomach	stomach
9	chr5:94378600-94380400	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:94378600-94382200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:94378800-94379800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:94379000-94379800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:94379000-94380400	Enhancers	Brain Anterior Caudate	brain
14	chr5:94379000-94380400	Enhancers	Psoas Muscle	Psoas
15	chr5:94379200-94379600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:94379200-94379800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:94379200-94382800	Weak transcription	Gastric	stomach
18	chr5:94379400-94379600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr5:94379400-94379800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:94379400-94380000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:94379400-94380200	Enhancers	Duodenum Mucosa	Duodenum
22	chr5:94379400-94380600	Enhancers	Adipose Nuclei	Adipose
23	chr5:94379400-94380800	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links