Variant report

Variant	rs66995620
Chromosome Location	chr5:94393244-94393245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11960770	0.87[EUR][1000 genomes]
rs1426099	1.00[ASN][1000 genomes]
rs17084403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55660342	0.83[ASN][1000 genomes]
rs56386135	0.89[ASN][1000 genomes]
rs72777390	0.93[ASN][1000 genomes]
rs72777398	0.93[ASN][1000 genomes]
rs72777399	0.96[ASN][1000 genomes]
rs72777400	1.00[ASN][1000 genomes]
rs72777401	1.00[ASN][1000 genomes]
rs72779403	1.00[ASN][1000 genomes]
rs72779406	0.86[ASN][1000 genomes]
rs72779407	0.82[ASN][1000 genomes]
rs72779408	0.86[ASN][1000 genomes]
rs72779410	0.82[ASN][1000 genomes]
rs890294	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
5	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94388400-94393400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:94391000-94395400	Weak transcription	GM12878-XiMat	blood
9	chr5:94393000-94394200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:94393200-94393400	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:94393200-94393600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:94393200-94393600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:94393200-94393800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:94393200-94394000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:94393200-94394000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:94393200-94394200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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