Variant report

Variant	rs17084403
Chromosome Location	chr5:94394561-94394562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11960770	0.93[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1426099	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs66995620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72777400	0.81[ASN][1000 genomes]
rs72777401	0.81[ASN][1000 genomes]
rs72779403	0.81[ASN][1000 genomes]
rs890294	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
5	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94391000-94395400	Weak transcription	GM12878-XiMat	blood
8	chr5:94393400-94394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:94393400-94395600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:94393600-94395000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94394000-94396600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:94394200-94395400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:94394200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:94394200-94398200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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