Variant report

Variant	rs72777400
Chromosome Location	chr5:94381630-94381631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1426099	1.00[ASN][1000 genomes]
rs17084403	0.81[ASN][1000 genomes]
rs55660342	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56386135	0.89[ASN][1000 genomes]
rs66995620	1.00[ASN][1000 genomes]
rs72777390	0.93[ASN][1000 genomes]
rs72777398	0.93[ASN][1000 genomes]
rs72777399	0.96[ASN][1000 genomes]
rs72777401	1.00[ASN][1000 genomes]
rs72779403	1.00[ASN][1000 genomes]
rs72779406	0.86[ASN][1000 genomes]
rs72779407	0.82[ASN][1000 genomes]
rs72779408	0.86[ASN][1000 genomes]
rs72779410	0.82[ASN][1000 genomes]
rs890294	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94377800-94382000	Enhancers	HUVEC	blood vessel
3	chr5:94378200-94382000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:94378600-94382200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:94379200-94382800	Weak transcription	Gastric	stomach
6	chr5:94379800-94381800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:94380400-94384000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:94380600-94384200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:94380800-94384000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:94381200-94384200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:94381400-94383400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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