Variant report

Variant	rs56386135
Chromosome Location	chr5:94391689-94391690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1426099	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55682625	0.95[EUR][1000 genomes]
rs56281733	0.95[EUR][1000 genomes]
rs66789646	0.95[EUR][1000 genomes]
rs66816988	0.95[EUR][1000 genomes]
rs66995620	0.89[ASN][1000 genomes]
rs67223139	0.95[EUR][1000 genomes]
rs67482451	0.95[EUR][1000 genomes]
rs72777358	0.92[EUR][1000 genomes]
rs72777361	0.95[EUR][1000 genomes]
rs72777365	0.95[EUR][1000 genomes]
rs72777369	0.95[EUR][1000 genomes]
rs72777390	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72777398	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72777399	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72777400	0.89[ASN][1000 genomes]
rs72777401	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72779403	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72779406	0.95[EUR][1000 genomes]
rs72779407	0.95[EUR][1000 genomes]
rs72779408	0.95[EUR][1000 genomes]
rs72779410	0.93[EUR][1000 genomes]
rs72779411	0.93[EUR][1000 genomes]
rs72779424	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94393200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94385400-94393200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
7	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94386800-94393200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94388400-94393400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:94391000-94395400	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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