Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11960770	0.85[ASN][1000 genomes]
rs1426099	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55682625	0.90[EUR][1000 genomes]
rs56281733	0.90[EUR][1000 genomes]
rs56386135	0.95[EUR][1000 genomes]
rs66789646	0.90[EUR][1000 genomes]
rs66816988	0.90[EUR][1000 genomes]
rs66995620	0.86[ASN][1000 genomes]
rs67223139	0.90[EUR][1000 genomes]
rs67482451	0.90[EUR][1000 genomes]
rs72777358	0.88[EUR][1000 genomes]
rs72777361	0.90[EUR][1000 genomes]
rs72777365	0.90[EUR][1000 genomes]
rs72777369	0.90[EUR][1000 genomes]
rs72777390	0.90[EUR][1000 genomes]
rs72777398	0.90[EUR][1000 genomes]
rs72777399	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72777400	0.86[ASN][1000 genomes]
rs72777401	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72779403	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72779407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72779408	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779410	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72779411	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72779424	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72779429	0.86[ASN][1000 genomes]
rs72779434	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72779435	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs890294	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
4	chr5:94394000-94396600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:94394200-94398200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:94394600-94398000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:94395000-94396200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:94395000-94396400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:94395200-94396400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:94395400-94396200	Enhancers	Primary B cells from cord blood	blood
11	chr5:94395400-94396200	Enhancers	GM12878-XiMat	blood
12	chr5:94395400-94396600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:94395400-94396800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:94395400-94396800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:94395600-94396200	Enhancers	Adipose Nuclei	Adipose
16	chr5:94395600-94397600	Enhancers	Primary hematopoietic stem cells	blood

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