Variant report

Variant	rs72779434
Chromosome Location	chr5:94429661-94429662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11960770	1.00[ASN][1000 genomes]
rs72779406	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72779407	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72779408	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72779410	0.82[ASN][1000 genomes]
rs72779424	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72779429	0.93[ASN][1000 genomes]
rs72779435	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779437	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs890294	0.82[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94428800-94429800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:94428800-94429800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:94428800-94429800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:94428800-94429800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:94429000-94429800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:94429000-94429800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:94429000-94429800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:94429000-94430000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:94429600-94429800	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links