Variant report

Variant	rs890294
Chromosome Location	chr5:94405027-94405028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11960770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1426099	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17084403	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs66995620	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72777400	0.82[ASN][1000 genomes]
rs72777401	0.82[ASN][1000 genomes]
rs72779403	0.82[ASN][1000 genomes]
rs72779406	0.96[ASN][1000 genomes]
rs72779407	1.00[ASN][1000 genomes]
rs72779408	0.96[ASN][1000 genomes]
rs72779410	1.00[ASN][1000 genomes]
rs72779411	0.86[ASN][1000 genomes]
rs72779424	0.96[ASN][1000 genomes]
rs72779429	0.89[ASN][1000 genomes]
rs72779434	0.82[ASN][1000 genomes]
rs72779435	0.82[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:94400000-94405800	Weak transcription	Fetal Stomach	stomach
4	chr5:94402800-94405800	Weak transcription	Lung	lung
5	chr5:94403400-94408000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:94403800-94406400	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:94404000-94405600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:94404000-94407000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:94404000-94407600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:94404200-94405200	Enhancers	Dnd41	blood
11	chr5:94404200-94405200	Flanking Active TSS	GM12878-XiMat	blood
12	chr5:94404200-94406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:94404400-94407000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:94404600-94405600	Weak transcription	HUVEC	blood vessel
15	chr5:94404600-94405800	Enhancers	Brain Anterior Caudate	brain
16	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:94404800-94405800	Weak transcription	Primary B cells from cord blood	blood
18	chr5:94404800-94412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:94404800-94414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:94405000-94405200	Enhancers	Duodenum Mucosa	Duodenum
21	chr5:94405000-94405800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr5:94405000-94407000	Enhancers	Adipose Nuclei	Adipose

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