Variant report
Variant | rs6870510 |
---|---|
Chromosome Location | chr5:44728026-44728027 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:44722551..44725527-chr5:44726909..44728900,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10512866 | 0.96[EUR][1000 genomes] |
rs11951477 | 0.87[EUR][1000 genomes] |
rs11957933 | 0.87[EUR][1000 genomes] |
rs13153376 | 0.87[EUR][1000 genomes] |
rs13153426 | 0.96[EUR][1000 genomes] |
rs13162944 | 0.87[EUR][1000 genomes] |
rs13163070 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13165641 | 0.96[EUR][1000 genomes] |
rs13165992 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13166622 | 0.87[EUR][1000 genomes] |
rs13167135 | 0.87[EUR][1000 genomes] |
rs13167593 | 0.87[EUR][1000 genomes] |
rs13172191 | 0.96[EUR][1000 genomes] |
rs13173899 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13180428 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13183825 | 0.87[EUR][1000 genomes] |
rs13184849 | 0.87[EUR][1000 genomes] |
rs13185697 | 0.87[EUR][1000 genomes] |
rs13187122 | 0.96[EUR][1000 genomes] |
rs13187187 | 0.96[EUR][1000 genomes] |
rs13188873 | 0.87[EUR][1000 genomes] |
rs13188895 | 0.87[EUR][1000 genomes] |
rs16901939 | 0.96[EUR][1000 genomes] |
rs16901954 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16901958 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs16901986 | 0.96[EUR][1000 genomes] |
rs16901987 | 0.96[EUR][1000 genomes] |
rs2330571 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs34094652 | 0.87[EUR][1000 genomes] |
rs34098474 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34133773 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34172556 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34216230 | 0.96[EUR][1000 genomes] |
rs34282174 | 0.96[EUR][1000 genomes] |
rs34544432 | 0.96[EUR][1000 genomes] |
rs34918593 | 0.96[EUR][1000 genomes] |
rs34942360 | 0.96[EUR][1000 genomes] |
rs35241613 | 0.87[EUR][1000 genomes] |
rs35278372 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35472604 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35534193 | 0.96[EUR][1000 genomes] |
rs35564441 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35842403 | 0.96[EUR][1000 genomes] |
rs35850760 | 0.96[EUR][1000 genomes] |
rs35868527 | 0.96[EUR][1000 genomes] |
rs36163058 | 0.96[EUR][1000 genomes] |
rs4398644 | 0.87[EUR][1000 genomes] |
rs57288883 | 0.87[EUR][1000 genomes] |
rs58871041 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59337658 | 0.87[EUR][1000 genomes] |
rs60303396 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60772043 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6451785 | 0.87[EUR][1000 genomes] |
rs6860030 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6869608 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6870104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6876888 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6877331 | 0.87[EUR][1000 genomes] |
rs6877454 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6881573 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6882983 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6891637 | 0.87[EUR][1000 genomes] |
rs6893211 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71590654 | 0.87[EUR][1000 genomes] |
rs7704815 | 0.87[EUR][1000 genomes] |
rs7710153 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7726555 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7735466 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7736197 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv880457 | chr5:44632008-44800665 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv830279 | chr5:44688175-44860815 | Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
3 | nsv1027897 | chr5:44695278-45061623 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:44706800-44729200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr5:44727200-44729400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
3 | chr5:44727200-44729600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
4 | chr5:44727400-44729800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
5 | chr5:44727600-44729200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
6 | chr5:44727600-44729200 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
7 | chr5:44727600-44729400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
8 | chr5:44727600-44729400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |