Variant report

Variant	rs71590654
Chromosome Location	chr5:44874692-44874693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10512866	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951477	1.00[EUR][1000 genomes]
rs11957933	1.00[EUR][1000 genomes]
rs13153376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153426	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163070	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13165641	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13165992	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166622	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167593	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13172191	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173899	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180428	0.87[EUR][1000 genomes]
rs13183825	1.00[EUR][1000 genomes]
rs13184849	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185697	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187122	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187187	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13188873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13188895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901939	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901954	0.87[EUR][1000 genomes]
rs16901958	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901986	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901987	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34094652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34098474	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34133773	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34172556	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34216230	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34282174	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34544432	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34918593	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34942360	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35241613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278372	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35472604	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35534193	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35564441	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35842403	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35850760	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35868527	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36163058	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398644	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55692415	1.00[ASN][1000 genomes]
rs57288883	1.00[EUR][1000 genomes]
rs58871041	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59337658	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60303396	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60772043	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61695869	1.00[ASN][1000 genomes]
rs6451785	1.00[EUR][1000 genomes]
rs6860030	0.87[EUR][1000 genomes]
rs6869608	0.87[EUR][1000 genomes]
rs6870104	0.87[EUR][1000 genomes]
rs6870510	0.87[EUR][1000 genomes]
rs6876888	0.87[EUR][1000 genomes]
rs6877331	1.00[EUR][1000 genomes]
rs6877454	0.87[EUR][1000 genomes]
rs6881573	0.87[EUR][1000 genomes]
rs6882983	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887363	1.00[ASN][1000 genomes]
rs6891637	1.00[EUR][1000 genomes]
rs6893211	0.87[EUR][1000 genomes]
rs73752417	1.00[ASN][1000 genomes]
rs73752418	1.00[ASN][1000 genomes]
rs73752428	1.00[ASN][1000 genomes]
rs73752430	1.00[ASN][1000 genomes]
rs73752431	1.00[ASN][1000 genomes]
rs7704815	1.00[EUR][1000 genomes]
rs7710153	0.87[EUR][1000 genomes]
rs7726555	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735466	0.91[EUR][1000 genomes]
rs7736197	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv881564	chr5:44783255-44914579	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv880397	chr5:44800665-44939293	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv880483	chr5:44827292-45038026	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44869600-44875200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:44872600-44875800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links