Variant report

Variant	rs73752417
Chromosome Location	chr5:44948382-44948383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:44947451..44951166-chr5:44951246..44953324,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10512866	1.00[ASN][1000 genomes]
rs13153376	1.00[ASN][1000 genomes]
rs13153426	1.00[ASN][1000 genomes]
rs13162944	1.00[ASN][1000 genomes]
rs13163070	1.00[ASN][1000 genomes]
rs13165641	1.00[ASN][1000 genomes]
rs13165992	1.00[ASN][1000 genomes]
rs13166622	1.00[ASN][1000 genomes]
rs13167135	1.00[ASN][1000 genomes]
rs13167593	1.00[ASN][1000 genomes]
rs13172191	1.00[ASN][1000 genomes]
rs13173899	1.00[ASN][1000 genomes]
rs13184849	1.00[ASN][1000 genomes]
rs13185697	1.00[ASN][1000 genomes]
rs13187122	1.00[ASN][1000 genomes]
rs13187187	1.00[ASN][1000 genomes]
rs13188873	1.00[ASN][1000 genomes]
rs13188895	1.00[ASN][1000 genomes]
rs16901939	1.00[ASN][1000 genomes]
rs16901958	1.00[ASN][1000 genomes]
rs16901986	1.00[ASN][1000 genomes]
rs16901987	1.00[ASN][1000 genomes]
rs34094652	1.00[ASN][1000 genomes]
rs34098474	1.00[ASN][1000 genomes]
rs34172556	1.00[ASN][1000 genomes]
rs34216230	1.00[ASN][1000 genomes]
rs34282174	1.00[ASN][1000 genomes]
rs34544432	1.00[ASN][1000 genomes]
rs34918593	1.00[ASN][1000 genomes]
rs34942360	1.00[ASN][1000 genomes]
rs35241613	1.00[ASN][1000 genomes]
rs35278372	1.00[ASN][1000 genomes]
rs35472604	1.00[ASN][1000 genomes]
rs35534193	1.00[ASN][1000 genomes]
rs35842403	1.00[ASN][1000 genomes]
rs35850760	1.00[ASN][1000 genomes]
rs36163058	1.00[ASN][1000 genomes]
rs4398644	1.00[ASN][1000 genomes]
rs55692415	1.00[ASN][1000 genomes]
rs58871041	1.00[ASN][1000 genomes]
rs59337658	1.00[ASN][1000 genomes]
rs60303396	1.00[ASN][1000 genomes]
rs60772043	1.00[ASN][1000 genomes]
rs61695869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71590654	1.00[ASN][1000 genomes]
rs73752418	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73752419	1.00[EUR][1000 genomes]
rs73752428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73752430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73752431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702844	1.00[EUR][1000 genomes]
rs7722864	1.00[EUR][1000 genomes]
rs7726555	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv880483	chr5:44827292-45038026	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44946000-44948400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:44946200-44949600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:44946400-44951800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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