Variant report

Variant	rs55692415
Chromosome Location	chr5:45059986-45059987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13153376	1.00[ASN][1000 genomes]
rs13162944	1.00[ASN][1000 genomes]
rs13167135	1.00[ASN][1000 genomes]
rs13184849	1.00[ASN][1000 genomes]
rs13185697	1.00[ASN][1000 genomes]
rs13188873	1.00[ASN][1000 genomes]
rs13188895	1.00[ASN][1000 genomes]
rs34094652	1.00[ASN][1000 genomes]
rs35241613	1.00[ASN][1000 genomes]
rs4398644	1.00[ASN][1000 genomes]
rs59337658	1.00[ASN][1000 genomes]
rs61695869	1.00[ASN][1000 genomes]
rs6887363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71590654	1.00[ASN][1000 genomes]
rs73752417	1.00[ASN][1000 genomes]
rs73752418	1.00[ASN][1000 genomes]
rs73752428	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73752430	1.00[ASN][1000 genomes]
rs73752431	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73752439	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv1033740	chr5:44996257-45378556	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537743	chr5:44996257-45378556	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1018651	chr5:45003750-45437670	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv537744	chr5:45003750-45437670	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv869151	chr5:45003751-45362364	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:45057400-45061800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:45057800-45060800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:45058600-45060800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:45059200-45060600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:45059400-45060600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:45059400-45060600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:45059400-45060600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:45059400-45060600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:45059600-45060800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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