Variant report

Variant	rs6872920
Chromosome Location	chr5:28366525-28366526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10035364	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10077425	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10472610	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10472611	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10472612	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12652450	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12652480	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12652497	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12654572	0.88[EUR][1000 genomes]
rs13167301	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13187196	0.82[AMR][1000 genomes]
rs4302599	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4302600	0.90[EUR][1000 genomes]
rs4340932	0.87[EUR][1000 genomes]
rs5001523	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6867663	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6889111	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7724139	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7724621	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7728791	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7728805	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7729724	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9632400	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9632401	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597700	chr5:27792192-28387115	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv880550	chr5:27863157-28732126	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1026700	chr5:28067287-28978638	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv537707	chr5:28067287-28978638	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1030345	chr5:28165763-28370968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537708	chr5:28165763-28370968	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017761	chr5:28270595-28494470	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv537709	chr5:28270595-28494470	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:28366400-28367200	Weak transcription	Hela-S3	cervix

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