Variant report

Variant	rs6873831
Chromosome Location	chr5:90687884-90687885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6869989	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870498	1.00[AMR][1000 genomes]
rs6879975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884322	1.00[AMR][1000 genomes]
rs7704369	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7716836	1.00[AMR][1000 genomes]
rs7717427	1.00[AMR][1000 genomes]
rs7722959	1.00[AMR][1000 genomes]
rs7736297	1.00[AMR][1000 genomes]
rs985433	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90680000-90692800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:90680800-90688200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:90682200-90693400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:90686200-90692800	Weak transcription	Pancreas	Pancrea
5	chr5:90687800-90688400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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