Variant report

Variant	rs6879975
Chromosome Location	chr5:90696090-90696091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6869989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870498	1.00[AMR][1000 genomes]
rs6873831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884322	1.00[AMR][1000 genomes]
rs7704369	1.00[AMR][1000 genomes]
rs7716836	1.00[AMR][1000 genomes]
rs7717427	1.00[AMR][1000 genomes]
rs7722959	1.00[AMR][1000 genomes]
rs7736297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90690800-90699000	Weak transcription	Aorta	Aorta
2	chr5:90695400-90696200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr5:90695600-90698000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:90695800-90697200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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