Variant report

Variant	rs6874865
Chromosome Location	chr5:151939078-151939079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17113380	0.95[EUR][1000 genomes]
rs17113394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28450108	0.96[EUR][1000 genomes]
rs4246031	0.96[EUR][1000 genomes]
rs4958556	0.96[EUR][1000 genomes]
rs57336534	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885840	0.96[EUR][1000 genomes]
rs6891898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73284867	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73286717	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151937000-151946200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:151937000-151946800	Weak transcription	Brain Substantia Nigra	brain
3	chr5:151937600-151940400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:151937800-151944000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:151938200-151947200	Weak transcription	Fetal Brain Male	brain
6	chr5:151938400-151944000	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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