Variant report

Variant	rs4958556
Chromosome Location	chr5:151907086-151907087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1035399	0.84[ASN][1000 genomes]
rs17113380	0.95[EUR][1000 genomes]
rs17113394	0.96[EUR][1000 genomes]
rs28450108	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2909954	0.88[ASN][1000 genomes]
rs4246031	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57336534	0.96[EUR][1000 genomes]
rs6874865	0.96[EUR][1000 genomes]
rs6885840	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891898	0.96[EUR][1000 genomes]
rs73284867	0.96[EUR][1000 genomes]
rs73286717	0.96[EUR][1000 genomes]
rs73798682	0.92[ASN][1000 genomes]
rs765674	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028516	chr5:151896509-151930647	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151906600-151907200	Enhancers	Small Intestine	intestine
2	chr5:151906600-151908000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:151906600-151908200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:151906800-151907200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:151906800-151907200	Enhancers	Adipose Nuclei	Adipose
6	chr5:151906800-151907200	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr5:151906800-151907200	Enhancers	Right Atrium	heart
8	chr5:151906800-151907200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr5:151906800-151907200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:151906800-151907400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:151906800-151907400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:151906800-151907400	Enhancers	Fetal Lung	lung
13	chr5:151906800-151907400	Enhancers	GM12878-XiMat	blood
14	chr5:151906800-151908000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:151906800-151908000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:151906800-151908000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr5:151906800-151908200	Enhancers	Primary B cells from peripheral blood	blood
18	chr5:151906800-151908200	Enhancers	Fetal Muscle Leg	muscle
19	chr5:151906800-151908400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:151906800-151908600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr5:151907000-151907200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:151907000-151907200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:151907000-151907200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:151907000-151907200	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr5:151907000-151907200	Enhancers	Left Ventricle	heart
26	chr5:151907000-151907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:151907000-151907400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:151907000-151907400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr5:151907000-151907800	Weak transcription	Spleen	Spleen
30	chr5:151907000-151908000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr5:151907000-151908000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:151907000-151908200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:151907000-151908800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr5:151907000-151909800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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