Variant report

Variant	rs765674
Chromosome Location	chr5:151893373-151893374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1035399	0.91[ASN][1000 genomes]
rs17548369	1.00[JPT][hapmap]
rs28450108	0.92[ASN][1000 genomes]
rs2909954	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2961740	0.84[AFR][1000 genomes]
rs4246031	0.92[ASN][1000 genomes]
rs4958556	0.92[ASN][1000 genomes]
rs6885840	0.92[ASN][1000 genomes]
rs73798682	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765676	0.86[AFR][1000 genomes]
rs7717092	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[ASN][1000 genomes]
rs7717150	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7717550	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151892800-151894000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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