Variant report
| Variant | rs6875852 |
|---|---|
| Chromosome Location | chr5:79317779-79317780 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:79310339..79313170-chr5:79315617..79318349,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12234104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16877428 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2118732 | 0.81[CEU][hapmap] |
| rs2434270 | 0.89[ASN][1000 genomes] |
| rs2434272 | 0.86[ASN][1000 genomes] |
| rs2434273 | 0.89[ASN][1000 genomes] |
| rs2434274 | 0.89[ASN][1000 genomes] |
| rs2434275 | 0.89[ASN][1000 genomes] |
| rs2434309 | 0.86[ASN][1000 genomes] |
| rs2434310 | 0.86[ASN][1000 genomes] |
| rs2434318 | 0.89[ASN][1000 genomes] |
| rs2434319 | 0.89[ASN][1000 genomes] |
| rs2438609 | 0.86[ASN][1000 genomes] |
| rs2438610 | 0.86[ASN][1000 genomes] |
| rs2438611 | 0.86[ASN][1000 genomes] |
| rs2438612 | 0.89[ASN][1000 genomes] |
| rs2438613 | 0.86[ASN][1000 genomes] |
| rs2438614 | 0.86[ASN][1000 genomes] |
| rs2438617 | 0.83[ASN][1000 genomes] |
| rs2438618 | 0.86[ASN][1000 genomes] |
| rs2438651 | 0.85[ASN][1000 genomes] |
| rs2451933 | 0.89[ASN][1000 genomes] |
| rs2451940 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs256450 | 0.89[ASN][1000 genomes] |
| rs256451 | 0.85[ASN][1000 genomes] |
| rs34727832 | 0.80[ASN][1000 genomes] |
| rs366471 | 0.86[ASN][1000 genomes] |
| rs385771 | 0.86[ASN][1000 genomes] |
| rs6874832 | 0.86[ASN][1000 genomes] |
| rs6878264 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432748 | chr5:79300434-79577760 | Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79316600-79319200 | Weak transcription | Aorta | Aorta |
| 2 | chr5:79317600-79318400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
