Variant report

Variant	rs6878264
Chromosome Location	chr5:79307752-79307753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12110039	0.88[GIH][hapmap]
rs12234104	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16877428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118732	0.81[CEU][hapmap]
rs2434270	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2434272	0.86[ASN][1000 genomes]
rs2434273	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2434274	0.89[ASN][1000 genomes]
rs2434275	0.89[ASN][1000 genomes]
rs2434309	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2434310	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2434318	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2434319	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2438607	0.82[EUR][1000 genomes]
rs2438609	0.86[ASN][1000 genomes]
rs2438610	0.86[ASN][1000 genomes]
rs2438611	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2438612	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2438613	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2438614	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2438617	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2438618	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2438651	0.85[ASN][1000 genomes]
rs2451933	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2451940	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs256440	0.90[CHD][hapmap]
rs256444	0.90[CHD][hapmap]
rs256447	0.90[CHD][hapmap]
rs256450	0.89[ASN][1000 genomes]
rs256451	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34727832	0.80[ASN][1000 genomes]
rs366471	0.86[ASN][1000 genomes]
rs385771	0.86[ASN][1000 genomes]
rs401302	0.85[CHD][hapmap]
rs423906	0.88[CHD][hapmap];0.80[TSI][hapmap]
rs6874832	0.86[ASN][1000 genomes]
rs6875852	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7736549	0.81[CEU][hapmap]
rs923635	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6878264	ZFYVE16	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79287600-79311400	Weak transcription	Aorta	Aorta
2	chr5:79288000-79311000	Weak transcription	Ovary	ovary
3	chr5:79288200-79310400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:79288200-79311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:79292000-79315600	Weak transcription	HSMMtube	muscle
6	chr5:79298200-79308600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:79301600-79311200	Weak transcription	Right Ventricle	heart
8	chr5:79305800-79311400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:79306600-79317000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:79306800-79313400	Weak transcription	Left Ventricle	heart

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