Variant report
Variant | rs687616 |
---|---|
Chromosome Location | chr1:103264978-103264979 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10047217 | 0.88[JPT][hapmap] |
rs12046389 | 1.00[JPT][hapmap] |
rs12143740 | 1.00[JPT][hapmap] |
rs12144670 | 1.00[JPT][hapmap] |
rs2126642 | 1.00[JPT][hapmap] |
rs2126643 | 1.00[JPT][hapmap] |
rs2199554 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2199555 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2598461 | 0.81[EUR][1000 genomes] |
rs2616010 | 1.00[JPT][hapmap] |
rs2616011 | 1.00[JPT][hapmap] |
rs2622865 | 1.00[JPT][hapmap] |
rs2708398 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3767273 | 1.00[JPT][hapmap] |
rs471949 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs472765 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs474472 | 0.81[EUR][1000 genomes] |
rs495182 | 0.81[EUR][1000 genomes] |
rs500936 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs514099 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs520747 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs527514 | 0.80[EUR][1000 genomes] |
rs570092 | 0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs597499 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs620658 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs665275 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6682134 | 1.00[JPT][hapmap] |
rs674479 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs688880 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7543705 | 1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv462705 | chr1:103123803-103267759 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
2 | nsv546923 | chr1:103123803-103267759 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv870987 | chr1:103155901-103267759 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv546925 | chr1:103176592-103267759 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv546926 | chr1:103183066-103267759 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv830882 | chr1:103192683-103355802 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
7 | nsv546927 | chr1:103199589-103267759 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103264600-103265400 | Weak transcription | Brain Germinal Matrix | brain |
2 | chr1:103264800-103265800 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |