Variant report
| Variant | rs474472 |
|---|---|
| Chromosome Location | chr1:103299040-103299041 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1241172 | 0.97[ASN][1000 genomes] |
| rs1241173 | 0.87[ASN][1000 genomes] |
| rs1241190 | 0.87[ASN][1000 genomes] |
| rs1241197 | 0.92[ASN][1000 genomes] |
| rs12748410 | 0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12749981 | 0.87[ASN][1000 genomes] |
| rs12752702 | 0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1932336 | 0.87[ASN][1000 genomes] |
| rs1932342 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2199554 | 0.82[EUR][1000 genomes] |
| rs2199555 | 0.81[EUR][1000 genomes] |
| rs2598461 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708397 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs472765 | 0.81[EUR][1000 genomes] |
| rs511308 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs514077 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs514099 | 0.82[EUR][1000 genomes] |
| rs579692 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs583527 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs606756 | 1.00[ASN][1000 genomes] |
| rs618072 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs621734 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs629282 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs631137 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs636801 | 0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs665275 | 0.81[EUR][1000 genomes] |
| rs670939 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs687616 | 0.81[EUR][1000 genomes] |
| rs72681287 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830882 | chr1:103192683-103355802 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:103293000-103299200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr1:103299000-103299800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
