Variant report
| Variant | rs621734 |
|---|---|
| Chromosome Location | chr1:103289931-103289932 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:103289578..103290098-chr13:111367303..111367871,3 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000153487 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12136748 | 1.00[CHB][hapmap] |
| rs1241172 | 0.97[ASN][1000 genomes] |
| rs1241173 | 0.87[ASN][1000 genomes] |
| rs1241190 | 0.87[ASN][1000 genomes] |
| rs1241197 | 0.92[ASN][1000 genomes] |
| rs12723167 | 1.00[CHB][hapmap] |
| rs12748410 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12749981 | 0.87[ASN][1000 genomes] |
| rs12752702 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1622838 | 1.00[CHB][hapmap] |
| rs1676501 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1676502 | 1.00[JPT][hapmap] |
| rs17447925 | 1.00[CHB][hapmap] |
| rs17506286 | 1.00[CHB][hapmap] |
| rs1932336 | 0.87[ASN][1000 genomes] |
| rs1932342 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2598461 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708397 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2786125 | 1.00[JPT][hapmap] |
| rs4353117 | 1.00[CHB][hapmap] |
| rs474472 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs511308 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs514077 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs579692 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs583527 | 0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs606756 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs618072 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs629282 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs631137 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs636801 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs670939 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72681287 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830882 | chr1:103192683-103355802 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
