Variant report

Variant	rs1241172
Chromosome Location	chr1:103299273-103299274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1031820	0.82[EUR][1000 genomes]
rs1241173	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1241181	0.81[EUR][1000 genomes]
rs1241182	0.81[EUR][1000 genomes]
rs1241190	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1241197	0.95[ASN][1000 genomes]
rs12748410	0.95[ASN][1000 genomes]
rs12749981	0.90[ASN][1000 genomes]
rs12752702	0.95[ASN][1000 genomes]
rs1676491	0.81[EUR][1000 genomes]
rs1763350	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1932336	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1932342	0.97[ASN][1000 genomes]
rs2598461	0.97[ASN][1000 genomes]
rs2615999	0.81[EUR][1000 genomes]
rs2708397	0.97[ASN][1000 genomes]
rs2783570	0.81[EUR][1000 genomes]
rs474472	0.97[ASN][1000 genomes]
rs511308	0.97[ASN][1000 genomes]
rs514077	0.97[ASN][1000 genomes]
rs579692	0.95[ASN][1000 genomes]
rs583527	0.97[ASN][1000 genomes]
rs606756	0.97[ASN][1000 genomes]
rs618072	0.97[ASN][1000 genomes]
rs621734	0.97[ASN][1000 genomes]
rs629282	0.97[ASN][1000 genomes]
rs631137	0.97[ASN][1000 genomes]
rs636801	0.95[ASN][1000 genomes]
rs670939	0.97[ASN][1000 genomes]
rs72681287	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103299000-103299800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:103299200-103299400	Enhancers	Hela-S3	cervix
3	chr1:103299200-103299600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:103299200-103300200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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