Variant report

Variant	rs1932336
Chromosome Location	chr1:103317640-103317641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1031820	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1241172	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1241173	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1241181	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1241182	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1241183	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1241190	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1241197	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1261690	0.80[AFR][1000 genomes]
rs12731575	0.83[ASN][1000 genomes]
rs12748410	0.85[ASN][1000 genomes]
rs12749981	1.00[ASN][1000 genomes]
rs12752702	0.85[ASN][1000 genomes]
rs1676491	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1763350	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1932342	0.87[ASN][1000 genomes]
rs2598461	0.87[ASN][1000 genomes]
rs2615999	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2708397	0.87[ASN][1000 genomes]
rs2783570	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs474472	0.87[ASN][1000 genomes]
rs511308	0.87[ASN][1000 genomes]
rs514077	0.87[ASN][1000 genomes]
rs579692	0.85[ASN][1000 genomes]
rs583527	0.87[ASN][1000 genomes]
rs606756	0.87[ASN][1000 genomes]
rs618072	0.87[ASN][1000 genomes]
rs621734	0.87[ASN][1000 genomes]
rs629282	0.87[ASN][1000 genomes]
rs631137	0.87[ASN][1000 genomes]
rs636801	0.85[ASN][1000 genomes]
rs670939	0.87[ASN][1000 genomes]
rs68109992	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72681287	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103311200-103319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103316400-103319400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:103316600-103318400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:103316600-103319400	Enhancers	Fetal Muscle Leg	muscle
5	chr1:103317000-103318400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:103317000-103318400	Enhancers	Osteobl	bone
7	chr1:103317000-103318600	Enhancers	HSMMtube	muscle
8	chr1:103317200-103318200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:103317200-103318200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:103317400-103317800	Weak transcription	Placenta	Placenta
11	chr1:103317400-103318800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:103317600-103317800	Enhancers	NHDF-Ad	bronchial

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