Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1031820	0.80[AMR][1000 genomes]
rs1241172	0.95[ASN][1000 genomes]
rs1241173	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1241190	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12748410	0.90[ASN][1000 genomes]
rs12749981	0.95[ASN][1000 genomes]
rs12752702	0.90[ASN][1000 genomes]
rs1676491	0.80[AMR][1000 genomes]
rs1763350	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1932336	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1932342	0.92[ASN][1000 genomes]
rs2598461	0.92[ASN][1000 genomes]
rs2615999	0.80[AMR][1000 genomes]
rs2708397	0.92[ASN][1000 genomes]
rs474472	0.92[ASN][1000 genomes]
rs511308	0.92[ASN][1000 genomes]
rs514077	0.92[ASN][1000 genomes]
rs579692	0.90[ASN][1000 genomes]
rs583527	0.92[ASN][1000 genomes]
rs606756	0.92[ASN][1000 genomes]
rs618072	0.92[ASN][1000 genomes]
rs621734	0.92[ASN][1000 genomes]
rs629282	0.92[ASN][1000 genomes]
rs631137	0.92[ASN][1000 genomes]
rs636801	0.90[ASN][1000 genomes]
rs670939	0.92[ASN][1000 genomes]
rs72681287	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103308600-103310800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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