Variant report
| Variant | rs6876442 |
|---|---|
| Chromosome Location | chr5:79657329-79657330 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:79657207-79657449 | K562 | blood: | n/a | chr5:79657329-79657340 |
| 2 | CEBPB | chr5:79657207-79657490 | HepG2 | liver: | n/a | chr5:79657329-79657340 |
| 3 | CEBPB | chr5:79657176-79657470 | K562 | blood: | n/a | chr5:79657329-79657340 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| HNRNPA1P12 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10053718 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12055120 | 0.83[JPT][hapmap] |
| rs12651951 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12652103 | 0.98[ASN][1000 genomes] |
| rs12654489 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs13171146 | 0.84[ASN][1000 genomes] |
| rs13179066 | 0.82[JPT][hapmap] |
| rs1963262 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4133093 | 0.80[JPT][hapmap] |
| rs6859378 | 0.86[ASN][1000 genomes] |
| rs7703252 | 0.91[JPT][hapmap] |
| rs879738 | 0.82[JPT][hapmap] |
| rs9293816 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs957855 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | esv3470535 | chr5:79652549-79659514 | Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3470536 | chr5:79652549-79659514 | Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3367208 | chr5:79652593-79659443 | Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv20746 | chr5:79652813-79659000 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
