Variant report

Variant	rs7703252
Chromosome Location	chr5:79666870-79666871
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10037935	0.83[JPT][hapmap]
rs12055120	0.91[JPT][hapmap]
rs12651951	0.91[JPT][hapmap]
rs12654489	0.91[JPT][hapmap]
rs13179066	0.90[JPT][hapmap]
rs1392392	0.82[CEU][hapmap]
rs4133093	0.90[JPT][hapmap]
rs6865895	0.84[CEU][hapmap]
rs6876442	0.91[JPT][hapmap]
rs9293816	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv328596	chr5:79662132-79670063	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79663400-79667000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:79664800-79667000	Enhancers	Brain Angular Gyrus	brain
3	chr5:79665000-79667000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:79665400-79667000	Enhancers	Duodenum Mucosa	Duodenum
5	chr5:79665800-79667000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:79666200-79667200	Enhancers	Brain Substantia Nigra	brain
7	chr5:79666600-79667000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:79666600-79667000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:79666600-79667200	Enhancers	Brain Hippocampus Middle	brain
10	chr5:79666600-79667800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:79666600-79668000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:79666600-79669000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:79666600-79669400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:79666800-79668000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:79666800-79668200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:79666800-79669400	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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