Variant report

Variant	rs6877182
Chromosome Location	chr5:151987403-151987404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12514629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56828623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57120231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151983400-151988000	Weak transcription	Aorta	Aorta
2	chr5:151985800-151989800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:151986200-151987800	Enhancers	Fetal Brain Male	brain
4	chr5:151986200-151988800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:151986400-151987600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:151986400-151987600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:151986400-151988600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:151986400-151988600	Enhancers	Fetal Lung	lung
9	chr5:151986400-151989800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:151986600-151987600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:151986600-151987600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:151986600-151987600	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:151986600-151988200	Enhancers	Fetal Brain Female	brain
14	chr5:151986600-151988400	Enhancers	Brain Substantia Nigra	brain
15	chr5:151986800-151987600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:151986800-151987600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:151986800-151987600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:151986800-151988400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:151987000-151987600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:151987000-151987600	Enhancers	Brain Germinal Matrix	brain
21	chr5:151987200-151989400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links