Variant report

Variant	rs6896282
Chromosome Location	chr5:152015363-152015364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12514629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56828623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57120231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862247	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv5074	chr5:152010691-152055779	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152008400-152022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:152009000-152016800	Enhancers	Fetal Brain Female	brain
3	chr5:152011800-152021800	Weak transcription	Aorta	Aorta
4	chr5:152012800-152018000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:152013400-152015400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:152013600-152015400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:152013600-152018400	Weak transcription	Fetal Lung	lung
8	chr5:152014600-152018400	Weak transcription	Adipose Nuclei	Adipose
9	chr5:152014800-152021000	Weak transcription	Fetal Brain Male	brain
10	chr5:152015000-152015400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:152015000-152024000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:152015200-152018800	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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