Variant report
| Variant | rs6878650 |
|---|---|
| Chromosome Location | chr5:119761855-119761856 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10068206 | 1.00[ASN][1000 genomes] |
| rs10478461 | 1.00[ASN][1000 genomes] |
| rs10478462 | 1.00[ASN][1000 genomes] |
| rs12019326 | 1.00[ASN][1000 genomes] |
| rs12719276 | 1.00[ASN][1000 genomes] |
| rs13154169 | 1.00[ASN][1000 genomes] |
| rs13179086 | 1.00[ASN][1000 genomes] |
| rs13361012 | 1.00[ASN][1000 genomes] |
| rs1432459 | 1.00[ASN][1000 genomes] |
| rs17146502 | 1.00[ASN][1000 genomes] |
| rs17146514 | 1.00[ASN][1000 genomes] |
| rs17146517 | 1.00[ASN][1000 genomes] |
| rs17146599 | 1.00[ASN][1000 genomes] |
| rs2099297 | 1.00[ASN][1000 genomes] |
| rs28673517 | 1.00[ASN][1000 genomes] |
| rs33936956 | 1.00[ASN][1000 genomes] |
| rs57783585 | 1.00[ASN][1000 genomes] |
| rs6861613 | 1.00[ASN][1000 genomes] |
| rs6864618 | 1.00[ASN][1000 genomes] |
| rs6868582 | 1.00[ASN][1000 genomes] |
| rs6883355 | 1.00[ASN][1000 genomes] |
| rs6883954 | 1.00[ASN][1000 genomes] |
| rs6898093 | 1.00[ASN][1000 genomes] |
| rs6898788 | 0.90[EUR][1000 genomes] |
| rs71586481 | 1.00[ASN][1000 genomes] |
| rs73782016 | 1.00[ASN][1000 genomes] |
| rs73784904 | 1.00[ASN][1000 genomes] |
| rs73784905 | 1.00[ASN][1000 genomes] |
| rs7702248 | 1.00[ASN][1000 genomes] |
| rs7708836 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532200 | chr5:119317901-120102513 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018955 | chr5:119679918-119802014 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020655 | chr5:119729801-119781762 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018100 | chr5:119749898-119802014 | Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:119742000-119775000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr5:119761800-119762000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
