Variant report

Variant	rs7702248
Chromosome Location	chr5:119728574-119728575
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10068206	1.00[ASN][1000 genomes]
rs10478461	1.00[ASN][1000 genomes]
rs10478462	1.00[ASN][1000 genomes]
rs12019326	1.00[ASN][1000 genomes]
rs12719276	1.00[ASN][1000 genomes]
rs13154169	1.00[ASN][1000 genomes]
rs13179086	1.00[ASN][1000 genomes]
rs13361012	1.00[ASN][1000 genomes]
rs1432459	1.00[ASN][1000 genomes]
rs17146502	1.00[ASN][1000 genomes]
rs17146514	1.00[ASN][1000 genomes]
rs17146517	1.00[ASN][1000 genomes]
rs17146599	1.00[ASN][1000 genomes]
rs2099297	1.00[ASN][1000 genomes]
rs28673517	1.00[ASN][1000 genomes]
rs33936956	1.00[ASN][1000 genomes]
rs57783585	1.00[ASN][1000 genomes]
rs6861613	1.00[ASN][1000 genomes]
rs6864618	1.00[ASN][1000 genomes]
rs6868582	1.00[ASN][1000 genomes]
rs6878650	1.00[ASN][1000 genomes]
rs6883355	1.00[ASN][1000 genomes]
rs6883954	1.00[ASN][1000 genomes]
rs6898093	1.00[ASN][1000 genomes]
rs71586481	1.00[ASN][1000 genomes]
rs73260312	1.00[AMR][1000 genomes]
rs73782016	1.00[ASN][1000 genomes]
rs73784904	1.00[ASN][1000 genomes]
rs73784905	1.00[ASN][1000 genomes]
rs7708836	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119724600-119735200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:119725000-119731800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:119725600-119732000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:119725800-119730800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:119725800-119731400	Weak transcription	NHDF-Ad	bronchial
6	chr5:119726000-119730800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:119727400-119733600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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